RNA id: XR_005052402.1


Basic Information

Item Value
RNA id XR_005052402.1
length 2613
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC118965067
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 13322042 ~ 13324795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagacacagacacacagacacagacacacagacacacagacacacagacctccAGGCCCTGCCACCATGAGGCTGCCACTGATCTTCAAATATAGCTGAGCATCAATCAGTTCCTGACAGGCTTTTAGTGTAATTTCTCTTCCTTCCCTTGGctttctgtcctcttcctctcaaCCTTTCCTCCGCTGCTCTTTGAGTATTCCTACAGGCGTGTGCTTTTTCAGTGAGTCTGCGGAGCAGAGGTCACATTTTGAGTTTCATCCCCCTGCCTCCCACATATCACAACGTTTAAATATCCTTGAGAGATATAGAAGAAGTTAATTAATGTATGTAAATCCAAGCCTGTTGTATCACAGCTTGCATTTATTTATTCCActttttttaatggaaatctTTAGATTTTTCAATTTGTCATCGTGGCTCGCTTCCTCCTTCAAAGTCTAGTCTGCATGGTTACCTTGAATAACACACAAACCGTTTCATCTCAAGACAGAACTCTTAATGGAATAATCATAGAACATTTCTTCCTCTGTAATCCTGTGATTATTTAATCTTCAAAATGACATTTGGTCTTTTTCTCCTTCCGCCACAGTTTAGACAGTCTAGACTGTCATCAGACATGTACAGGTATGTTATGAATGTTGATGACTTTGTGTTATATCACATGTAGTGTAGTGGTGCTTGGAGAAGTGGTTATACATTAATCTTACCCAACATTTCCCAAACGGCTCACCTGGTGAAGAAAAGGTGCACTGTGTAAACAATTTGATGAGAAACAGaaaatgatcaatcccatattggtaTTTTGCAGTCAGGCCATGCCAAGCTCTATACACCAATTGGCAACACCCACTCCTCAGAAGTGTAAACACAAGTTGCTGAATTGTTCGTTTAGAAATCAGAGCTTTACCACTATAGAAGGCCACAGATGAGCTCTCCTGTTTTGGAGGAAAGTTGAAGTCAATGGTGAAGCAAGAGCCAGAGGTGAAGGATTGAGAGtaagaggaggacgaggaaggACAGTTGTCTCAGATGAGAACACATTGGTTGACCATGTCCTCAAACATGGATTGAGAATGAGGGAGGCTGGGCAGAGAGTTCAGCCCAACCTGAGCCACTACACGGTTGCATCTATCATCCTTACATTCAGAAATGAGAACCGGTAAGTTACCTACCATCTACACTATGCTCTTtatgtatgtatactgtagtatactgcagtCTGACATATCAGTAGGCCTATGTTACTCGGTGATTGTTGGCCAATGTTACAGTAATGTCATTTCATATtgaatgatttttttttattttagcttACTGTAACCAATCAAATCATATTTGTGGATCTTCTGCAGAACTGAGAGAAGGCCAGGCCATGGTggaagacaccggctgttcacaccagaacaggaGACCTCTTTTgtgaacatggtggtggcaaacaATACCAGTACACTACGAGAAATCCAGAACCACATAATTTCAGACAACACAATATTCAATAACATTCACCAGGTGGGCTTGTCTACACTGGACCGTGTATTACAGCGCAACCGAATCCGGATGAAACAGGtctacagggtgccatttgagcgAAACTCAGAGAGGGTTAAAGAACAGCGCTATGAATATGTGCAAAGAGTCTTGGAGCTGGATGCCGCTGCAATTCAGCACGTTTATATTTACATTgatgaggctggcttcaacctAGCCAAAAGAAAGGGATTGGGAAGGAACATTATTGGCCACCGTGCCATTGTGAAAATTCCTGGACAGCGTGGAGGGAATATCACCATGTGCGCAGCCGTGAGTCAGCAAAGCCATCGCCATGCCAACCTTGGTCCCTACAACATCGCCCTTCTCATCACATTCCATGCTGCTCTGGTCTGCAACTGGTTCATCGATCACCCACAATTTATTGTTCTGTACCTCCAATCATATTCCCCATTCCTAAACCCAATTGAAGAGGGGTTTTTTTCGGCATGGCGATGGAAGGTGTATGACCGCCATCCCCTCGCATGCAATGGAGGATACATGTGGTGACGTTGATGTGGTGGTTTTCGGCAGCTGGATCCGTCACTCCAGAAGATTCTTTCCccgctgtttagccagggagaagcTGGCTTGCGATGTAGATGCTGTGGTGCTGTGGCCAGACCaaaataggaggcaggatgcTGCCCCATGTATTTTTTCTTACATTTTGCATGTGCTTTTATCTttttgtgtttagagttttgaaagATTGAGCATCTTTaatattttgtttttgtacagAAAACCATTTATCTTACTGAATGTTTTTCCTGGTTTTCTCCTGTTATGTATGGCAAGCCTTgcataaaaatacaagtgttcAAAAATATTGCATTTTGGAAATAAATGACAATGTTTTTGTTACTGTATTGCATTTGAATGCGTTTTTTAATGTAAATTTGAGTAGGTATACATTACTGTAACCATATTTTACAAATGGCTACAGTGTAACACTGAAAAATTGATAttcatagtagtgttttgtgtttAGCACATCAATGTGTTGTTGGTTGGTAGACAGATCAATTCATaagacgcgtgtgtgtgtgtatgtcgttctgatacaacaacaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU540779 lncRNA upstream 7569 13314121 ~ 13314473 (+) True G475693
TU540761 lncRNA upstream 23652 13298098 ~ 13298390 (+) True G475675
TU540747 lncRNA upstream 48561 13273264 ~ 13273481 (+) True G475661
TU540725 lncRNA upstream 64393 13257429 ~ 13257649 (+) True G475640
TU540723 lncRNA upstream 65232 13256594 ~ 13256810 (+) True G475638
TU540796 lncRNA downstream 2857 13327652 ~ 13327851 (+) True G475710
TU540797 lncRNA downstream 3199 13327994 ~ 13328573 (+) True G475711
TU540858 lncRNA downstream 44571 13369366 ~ 13369565 (+) True G475770
TU540859 lncRNA downstream 45984 13370779 ~ 13370989 (+) True G475771
TU540865 lncRNA downstream 48322 13373117 ~ 13373324 (+) True G475777
XM_021605302.2 mRNA upstream 367983 12940770 ~ 12954059 (+) True aqp3a
XM_036979430.1 mRNA upstream 396094 12896951 ~ 12925948 (+) True nol6
XM_021605296.2 mRNA upstream 426266 12888487 ~ 12895776 (+) False arsk
XM_021605297.2 mRNA upstream 426646 12888485 ~ 12895396 (+) False arsk
XM_036979428.1 mRNA upstream 426646 12889361 ~ 12895396 (+) True arsk
XM_021605308.2 mRNA downstream 401914 13726709 ~ 13732626 (+) False LOC110525299
XM_021605307.2 mRNA downstream 401914 13726709 ~ 13733060 (+) True LOC110525299
XM_021605312.2 mRNA downstream 1316937 14641732 ~ 14644594 (+) True gig2p
XM_021605316.2 mRNA downstream 1366769 14691564 ~ 14706855 (+) False LOC110525306
XM_021605318.2 mRNA downstream 1367631 14692426 ~ 14706855 (+) True LOC110525306
TU540778 other upstream 8073 13313679 ~ 13313969 (+) True G475692
TU539960 other upstream 608744 12712306 ~ 12713298 (+) True G474949
TU539852 other upstream 817923 12503760 ~ 12504119 (+) True G474851
TU539228 other upstream 1131470 12188288 ~ 12190572 (+) True G474321
TU537828 other upstream 2042777 11278338 ~ 11279265 (+) True G473070
TU541379 other downstream 660045 13984840 ~ 13985259 (+) True G476234
TU541393 other downstream 672289 13997084 ~ 14015564 (+) True G476248
TU544659 other downstream 3034621 16359416 ~ 16359751 (+) True G479239
TU545301 other downstream 3654387 16979182 ~ 16982220 (+) True traf1
TU545405 other downstream 3776191 17100986 ~ 17107427 (+) True dab2ipa

Expression Profile