RNA id: XM_021605307.2


Basic Information

Item Value
RNA id XM_021605307.2
length 1856
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110525299
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 13726709 ~ 13733060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTGAGATATTTTTTCTCCCCTTGCTTTATAAATCCCAGCGATCCGTTCGCTTTATAGCACTTTCCGGGCCCGAGATATGGCAATGGTAGTTAGCGTCTGGCGAGATCCGCAGGAAGACGTGGTCGGAGGACCTCCAAGCGGCCCCAATCCAGCAACTCAGCCGGCGAGGGAGCAACAGCAGGCGGCGTCGGCAGCACCGCACACTCCGCAGACCCCAAGTCAGCCAGGACCCCCGTCAACACCAGGGACTGCTGGAGACAAGGGGAGTCAGAATTCTGGACAGAGTGGCGCACAGCATATAGAATGTGTTGTTTGCGGAGACAAATCGAGCGGCAAGCACTATGGTCAGTTCACCTGCGAGGGATGCAAAAGTTTCTTCAAGAGGAGTGTCCGAAGGAACTTAACGTATACATGTCGTGCCAATAGGAACTGTCCCATTGACCAACACCACCGAAATCAGTGCCAATACTGTCGGCTGAAGAAATGTTTAAAAGTGGGAATGCGGCGGGAAGCGGTTCAGCGAGGACGAATGCCTCCAACCCAGCCGAACCCAGGGCAGTACGGGCTGACGAACGGGGACCCTCTGAACGGCCATTGCTATCTCTCCGGATACATCTCGTTATTGCTTCGGGCTGAGCCTTACCCGACGTCCCGATATGGAAGCCAATGCATGCAGCCCAACAATATCATGGGTATTGAGAACATATGCGAGCTGGCAGCTCGCTTGCTCTTCAGCGCCGTGGAATGGGCGAGGAACATCCCTTTCTTTCCAGATCTGCAGATCACCGACCAGGTGTCCCTTCTCAGGCTGACGTGGAGCGAATTGTTTGTGCTAAACGCGGCTCAGTGCTCCATGCCTTTGCATGTGGCCCCTCTGCTCGCCGCGGCAGGCCTCCACGCTTCTCCAATGTCTGCGGACCGAGTCGTGGCTTTCATGGATCACATTCGAATCTTCCAGGAGCAGGTTGAGAAGCTCAAGGCCCTCCACGTTGACTCGGCAGAGTACAGCTGCATCAAGGCGATAGTACTCTTCACATCAGACGCTTGCGGCCTGTCAGATGCGGCTCACATCGAAAGCCTGCAGGAGAAGTCTCAGTGCGCCCTGGAGGAATACGTGAGGAGCCAGTACCCTAACCAGCCCAGCCGCTTTGGCAAGCTCTTGCTGCGGCTTCCATCTCTCCGCACCGTCTCCTCATCGGTAATTGAGCAGCTGTTCTTCGTCCGCTTGGTAGGTAAAACCCCTATTGAAACGCTCATCAGGGATATGCTATTATCCGGGAGCAGCTTCAACTGGCCTTACATGTCCATCCAATGATCCGAATGAGAGTgacaaaaagagagaaaaaggaccAAAATTCAGCATCCCGTACAAGAAGACTATATATAGGACATTTTCTGAACATATTGGAAGACAtgacatgttgttgtttttttgtcttcTGGGACTAAGATCTGAGATGGAATACGTTATGTACAGAAAATATGGAACTGGACTTACACCTGTTTAAATCCACTCTCATCTTCAAGAACAGTACTCTTCATTTTGTAAAATACTAGTCTTTATTTTccttttttgtaaaaaaaaacaaacaaacaaataaaatgaAAAACAAGACTTAGCGGGAAAATAATGTTTCCAAGCAATTATAAGAAATGTCCTGTGTCTATGTACCcctctgttttgtattttttctggTTCTAAACCAGCTTTTCTGTGATTCTATACTAATAATTTTTATATAACCTTTTGCTTCTTATTATGAGTGCGATATATATGTTGTCGAAGCTACGTTCTCCGAGAATTAAAAGTTGAAGTGGGAATTTAAAacagaaaaataaagaaattTAGACAAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08547 NR2F1, TFCOUP1; COUP transcription factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU541232 lncRNA upstream 10987 13715507 ~ 13715722 (+) True G476096
TU541231 lncRNA upstream 11293 13715181 ~ 13715416 (+) True G476095
TU541227 lncRNA upstream 16684 13709819 ~ 13710025 (+) True G476091
TU541225 lncRNA upstream 19411 13707059 ~ 13707298 (+) True G476089
TU541196 lncRNA upstream 77056 13649385 ~ 13649653 (+) True G476060
TU541242 lncRNA downstream 5228 13738288 ~ 13766221 (+) True G476104
TU541315 lncRNA downstream 107460 13840520 ~ 13840927 (+) True G476170
TU541319 lncRNA downstream 138643 13871703 ~ 13871926 (+) True G476174
TU541322 lncRNA downstream 143078 13876138 ~ 13876371 (+) True G476177
TU541323 lncRNA downstream 143674 13876734 ~ 13876970 (+) True G476178
XR_005052402.1 mRNA upstream 401914 13322042 ~ 13324795 (+) True LOC118965067
XM_021605302.2 mRNA upstream 772650 12940770 ~ 12954059 (+) True aqp3a
XM_036979430.1 mRNA upstream 800761 12896951 ~ 12925948 (+) True nol6
XM_021605296.2 mRNA upstream 830933 12888487 ~ 12895776 (+) False arsk
XM_021605312.2 mRNA downstream 908672 14641732 ~ 14644594 (+) True gig2p
XM_021605316.2 mRNA downstream 958504 14691564 ~ 14706855 (+) False LOC110525306
XM_021605318.2 mRNA downstream 959366 14692426 ~ 14706855 (+) True LOC110525306
XM_021605049.2 mRNA downstream 973817 14706877 ~ 14718733 (+) False LOC110525102
XM_036979438.1 mRNA downstream 983258 14716318 ~ 14718733 (+) True LOC110525102
TU540778 other upstream 412740 13313679 ~ 13313969 (+) True G475692
TU539960 other upstream 1013411 12712306 ~ 12713298 (+) True G474949
TU539852 other upstream 1222590 12503760 ~ 12504119 (+) True G474851
TU539228 other upstream 1536137 12188288 ~ 12190572 (+) True G474321
TU537828 other upstream 2447444 11278338 ~ 11279265 (+) True G473070
TU541379 other downstream 251780 13984840 ~ 13985259 (+) True G476234
TU541393 other downstream 264024 13997084 ~ 14015564 (+) True G476248
TU544659 other downstream 2626356 16359416 ~ 16359751 (+) True G479239
TU545301 other downstream 3246122 16979182 ~ 16982220 (+) True traf1
TU545405 other downstream 3367926 17100986 ~ 17107427 (+) True dab2ipa

Expression Profile