RNA id: XM_021605318.2


Basic Information

Item Value
RNA id XM_021605318.2
length 1566
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110525306
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 14691564 ~ 14706855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGTTTAGACTACATAGTGAAAGAGACTCGCTCCCTTCTTTCATAACTGTTGAACATTTTAGTTTCTTTATCTCTCCGTGCGCTCTTGAGATGTTGGCTACCATAAAGAACATTTCCGTAACCTACGACGGTATGGGCAAAACCTTTAGCAGCGGCGACTTCATTTCGGGGCGAATAACGTTGGAATTAGGAAAAGATTGCAAAATAGATTATCTTTCCATAAAAGCAAAGGGAAAGTCAGAAGTCCGTTGGACAGAACATCATAATAAGACAACTGTAACTTACCATTCCAAGGACAAGATGTTCAGCATTGAACAATTTATCATTCGAGAACAAAAAGGCCAAGATTGTAATGTTGTAGCTCCTGGAACTCACGTTTACCCATTCACATTTCAGATCCCTCAACAAGCAATGCCATCATCCTTTAAAGGCGCCTGGGGGAAAATCCTGTATACGTTAGAGGCCAAGTTGAGCAGATCAATGAGGATATCCAGCAAAGCCAGGGCTGAGTTCCCCTTTGTCTCCAAGgcagacctgggcagcatcccTGAGCtgatgATACCTCAGCATGGAACCAAGGATAAAAAGATGAAGTTATTCACCTCAGGAAAAGTGGGAATGGACATTCACATAGAGAGAATGGGCTACTACTTAGGTGAAGACCTAAAGGTTGTGGCGTCCATTGAGAATAGCTCCTCTCGTGAGATCAAGCCCAAGTACACCCTGTACCAGAAGGACAGCTTCTTTGCgaggggaaagaggagggtgTCCACCAAAGACATCCTGAAAGAGCTGGGAGAGCCCATCCCGCCATCTGGGAAACTGAAAGTCACTAAAGTCCTTAAAATCCCACAACACATTGTTCCATCCATCTTCACCTGCAGTAATATTAAATGCGAGTACAGGCTgaagATCGTCCTGGATGTTCCCTATGCCAGAGACCCAGAAATCAAATTGCCACTGGTCATCCTCCCTGCAACTCAAACGCCTGGACTGCAGCCGCCACCTTACTCTGACTTTGGTTTTGACTCGTTCGGGAATGCAAACCAACCCGGATGGAACAGCACACCACAATTTCCGGGAGCCTATCCACCAATGGCCCCAGGAGCCTATCCACCAATGGCCCCAGGAGCCTATCCACCAATGGCCCCAGGAGCTTTAGCGCCTCCCCCAGCCTACGGAACGTACCCATCCCTGTCTGATTTTGGTGGTAAATCCTAGTGGGAGAAAAGATAAGAGGGTAAAATATAACAAATGAATGCATTGTATATGATAATGTGCAGTGCTCTATCTCTTTAGACTTCCATTCATACTTCCATACTTCTCTGTTGTTGATGTTTCTTGTCATTGACATGACAACGTGTCTAACTTCAATATCTTTGTGGAAATGCCAACTATGAATAATGAAATGGAACAAAGCTCTGCTTAAGTGTGCCTTGTATAAGTTGTCTAAATATGAATATTGCTGTTACGAATGTAACAATGAATGTTCTAATTTCATGGTGGTGCTGATAATcgaataaaaatattttatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU542256 lncRNA upstream 11853 14677125 ~ 14680573 (+) True G477008
TU542204 lncRNA upstream 56197 14636021 ~ 14636229 (+) True G476980
TU542164 lncRNA upstream 104166 14570132 ~ 14588260 (+) True G476943
TU542077 lncRNA upstream 251059 14439451 ~ 14441367 (+) True G476861
TU542042 lncRNA upstream 315441 14376702 ~ 14376985 (+) True G476826
TU542635 lncRNA downstream 111387 14818242 ~ 14819574 (+) True G477365
TU542656 lncRNA downstream 162795 14869650 ~ 14872190 (+) True G477386
TU542677 lncRNA downstream 190656 14897511 ~ 14897949 (+) True G477404
TU542678 lncRNA downstream 192259 14899114 ~ 14899315 (+) True G477405
TU542681 lncRNA downstream 195333 14902188 ~ 14902584 (+) True G477407
XM_021605312.2 mRNA upstream 47832 14641732 ~ 14644594 (+) True gig2p
XM_021605307.2 mRNA upstream 959366 13726709 ~ 13733060 (+) True LOC110525299
XM_021605308.2 mRNA upstream 959800 13726709 ~ 13732626 (+) False LOC110525299
XR_005052402.1 mRNA upstream 1367631 13322042 ~ 13324795 (+) True LOC118965067
XM_021605302.2 mRNA upstream 1738367 12940770 ~ 12954059 (+) True aqp3a
XM_021605049.2 mRNA downstream 22 14706877 ~ 14718733 (+) False LOC110525102
XM_036979438.1 mRNA downstream 9463 14716318 ~ 14718733 (+) True LOC110525102
LOC110525103 mRNA downstream 129288 14836143 ~ 14890175 (+) True LOC110525103
XM_021605320.2 mRNA downstream 262635 14969490 ~ 14995677 (+) True LOC110525309
XM_021605326.1 mRNA downstream 1020642 15727497 ~ 15730279 (+) False LOC110525312
TU541393 other upstream 676862 13997084 ~ 14015564 (+) True G476248
TU541379 other upstream 707167 13984840 ~ 13985259 (+) True G476234
TU540778 other upstream 1378457 13313679 ~ 13313969 (+) True G475692
TU539960 other upstream 1979128 12712306 ~ 12713298 (+) True G474949
TU539852 other upstream 2188307 12503760 ~ 12504119 (+) True G474851
TU544659 other downstream 1652561 16359416 ~ 16359751 (+) True G479239
TU545301 other downstream 2272327 16979182 ~ 16982220 (+) True traf1
TU545405 other downstream 2394131 17100986 ~ 17107427 (+) True dab2ipa
TU545623 other downstream 2613919 17320774 ~ 17321165 (+) True G480128
TU545733 other downstream 2737898 17444753 ~ 17445931 (+) True G480219

Expression Profile