RNA id: XM_021605049.2


Basic Information

Item Value
RNA id XM_021605049.2
length 2605
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC110525102
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 14706877 ~ 14718733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatatatatatataataatagtaAAAATGGCAATTTCCAAATAAGTACAGTGAAATAAATAGCAGGAACGTCCACGATGATAATAGGCTACTGGTCCATTTTTTTTATGATGAGATACATAAAACCAGGAACACCAACTAAATACCACACCCTATGCATACATAAACCTTATATAGGCCTTTATAACTTTTTATTTGATGGAGAAGAATCAGAGTTATGCTGTCACAAGTATTGGAAGATTAATCAGACGTGACTCAGATGTTTAATGATGACATTGCAAATATTGTGGGCGTAGGCCTACTTATTGTCCCCGCCTTTTGTAAATACAGACCTCCTCCCTTACTATGTTATATTAAAGACTGTTGTGAACCCTACCAAcatttgtttttctttctgtGTTGGTTACGCTTCATTTCGTGGACCAGAATGACAATCCAAATCTTTACCATCAAATATGATGCGGAAAATGAGCCATATGTATTTTCAAGGGGAGATACTATCACAGGGAGAATTATTTTGGTAGTTTCAGCTGAAACAAAGATTAAATGTCTTTCTATCAAGGCTAAAGGAAAAGCTCATGTTTTGTGGGAGGAAGATTATGGATTATACCTGGACGAAACATACCGTGCCAAATATGAATATTTTTCAATTGAGCAGTGTGTACTGCAGGAAGGGAATGGCACCAATGTTCTAACTACAGGAAGACATGTGTATCCTTTCTCTTTCCAAATTCCTGACGAGGACATGCCATCCTCTTTCCAGGGTAAATGTGGTCAAATCCTCTACTCATTAGAGGCTAAGTTGACCAGGTCAATGAGGTTTGACACCAAAGCCAAGACTGATTTCCCCTTTGTCTCAAAGGCAGACCGGTCTATGATCCCATATCTAATGAAACCTCAGCATGGGACCAAGGATAAGGATGTTATGTTCTTTGCATCTGGAAAAATCTCTGCGAGcattcacattgagagacagGGATACCAGCAAGgAGAGGCTCTGAAAGTCAGGGCAATTATTGTCAACAACTCAACTCGCCCAGTGACCCCAAAATACTACCTGTACGAAAAGCAGTGTTTCTACGCCCAGAAAAAGAGGAAAGTTCACACCCACAACATCTTGAAAGAGAAGGGCGATCGGGTCCCTGCTGGCACTCGGCAGACGGTGACCCAAGTTTTGACCATCCCTCCACAACTCCCTGCCACCATCTTCAACTGTCCTATACTCAAATTAGAGTACCGATTGAAGGTCATTCTTGATGTTAAACTGGCCATAGACCCTGAGATCAAGCTACCTATCGTTGTTCTTACTGCAACTCAAACTCTTGGACAGGAACCCCCACCTTACTCCAGTTTTGGTTTTGAGTCACAAGTCCCAACTGCATCTGAGCTACCACCCCCCTACGAAATGTTTGCTTCCTCGTCAAATTTCTATAGAAAATTGTAAAGGCATGGAGATTCTCAATTGGGCGCAAAAGTCTGTTCTCTACTCAACTCCTCCATCCTACTCTCTTCCATGCCCCAGAGGCCGATAAGGGGTCGCCATATATAGAAGAGGGTCAATTCGTTAATAAGGGAACAGAGGAGTTTGATCCTCTCCTTGATAGCCTCCTCTCTGGCCAAGGATATTGAGATGTATCCTACCAGAGTACTACATGGAAGAGGTTTGAAATGCACCACACCCCCTTTGAATCCGTTGTTGTTTTGTCAGAGAAAAGCATGTACCTTTAAATACAATATGCTACCTATAATTTTATCTATAAaacacccatctagtactgggttGGACCCCccctttgccttcagaacagcctgaatGGATGCACCGTATCAGCAACAATGTTTAAATACGCTGTGGCGTTGAACCGTTGCTcatttgtttgtctgtttgtggcccatctgttagcttgcacgattcttgccattctccttcgatctctcatcaacgagctgttttcacccacaggactgcagcTGActgaatgttttttgtttgtcgcaccattgttggtaaaccctagacactgtcgtgtggAAAAAGCCCAGGAGGGTGGCCATTTCTTCGATATTGGATCCGGCGCACCGATGTtgataccacgctcaaagtcgcaTACGTCACTTGTTTTGTCCATTCTAAcgatcgaacagtaactgaatgccacAATGCCTGTCTGGTGTACTTAATAAACTGGCCAGTGAGCGTATATATTAAAAGTCTAATTTCATACCAGCGTATTTGTTTTCAAGTTTCCTCCCCCTTGCCtcgattacctttgacctttttcaaaaagaggggaagagaggacagaggagatgacGTGAGGAATTGAGCAAATTCTATTGATATTCTCCTGGATAAAGGGAGATGAAGGGTGAAGAATTTCAGAAGAATTAGAATTGATTATTGTATTGTCTAACCATTTCCTCCTTCACTTTTATTGGTCTTTTTTTGtatatgcatgcatgactgtacGTTGCTTTGGATGACagcttctgctaaatggcatattatattattatttagcaTCTATACGTATTGCTAATTTACCTGCCTTGATTTGAAATGTGTGCATGTTGccttagaaaataataaaaagcactatacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU542238 lncRNA upstream 6644 14691905 ~ 14700233 (+) False G476995
TU542236 lncRNA upstream 6644 14692482 ~ 14700233 (+) True G476995
TU542256 lncRNA upstream 26304 14677125 ~ 14680573 (+) True G477008
TU542204 lncRNA upstream 70648 14636021 ~ 14636229 (+) True G476980
TU542164 lncRNA upstream 118617 14570132 ~ 14588260 (+) True G476943
TU542635 lncRNA downstream 99509 14818242 ~ 14819574 (+) True G477365
TU542656 lncRNA downstream 150917 14869650 ~ 14872190 (+) True G477386
TU542677 lncRNA downstream 178778 14897511 ~ 14897949 (+) True G477404
TU542678 lncRNA downstream 180381 14899114 ~ 14899315 (+) True G477405
TU542681 lncRNA downstream 183455 14902188 ~ 14902584 (+) True G477407
XM_021605316.2 mRNA upstream 22 14691564 ~ 14706855 (+) False LOC110525306
XM_021605318.2 mRNA upstream 22 14692426 ~ 14706855 (+) True LOC110525306
XM_021605312.2 mRNA upstream 62283 14641732 ~ 14644594 (+) True gig2p
XM_021605307.2 mRNA upstream 973817 13726709 ~ 13733060 (+) True LOC110525299
XM_021605308.2 mRNA upstream 974251 13726709 ~ 13732626 (+) False LOC110525299
LOC110525103 mRNA downstream 117410 14836143 ~ 14890175 (+) True LOC110525103
XM_021605320.2 mRNA downstream 250757 14969490 ~ 14995677 (+) True LOC110525309
XM_021605326.1 mRNA downstream 1008764 15727497 ~ 15730279 (+) False LOC110525312
XR_002473690.2 mRNA downstream 1098717 15817450 ~ 15821090 (+) False LOC110525007
XR_002473691.2 mRNA downstream 1098717 15817450 ~ 15821090 (+) True LOC110525007
TU541393 other upstream 691313 13997084 ~ 14015564 (+) True G476248
TU541379 other upstream 721618 13984840 ~ 13985259 (+) True G476234
TU540778 other upstream 1392908 13313679 ~ 13313969 (+) True G475692
TU539960 other upstream 1993579 12712306 ~ 12713298 (+) True G474949
TU539852 other upstream 2202758 12503760 ~ 12504119 (+) True G474851
TU544659 other downstream 1640683 16359416 ~ 16359751 (+) True G479239
TU545301 other downstream 2260449 16979182 ~ 16982220 (+) True traf1
TU545405 other downstream 2382253 17100986 ~ 17107427 (+) True dab2ipa
TU545623 other downstream 2602041 17320774 ~ 17321165 (+) True G480128
TU545733 other downstream 2726020 17444753 ~ 17445931 (+) True G480219

Expression Profile