RNA id: XM_021605347.2


Basic Information

Item Value
RNA id XM_021605347.2
length 1907
RNA type mRNA
GC content 0.48
exon number 11
gene id slc2a6
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16751007 ~ 16762323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGGAATTGGTTGTGATTGCAAAACTCTAGTTCCACTTTCAGCTTGTTAAATGACAATAGCATTAGAACTAGTTTAAGACAGGTTCTACAGGTTGCTACAAGGAAAATGGACGAGAAAACACCGCTAATAATCAAGCCCACATCGCGCACAAGCAATGCCAGGCTATACCTCGCTGTTTTTTCTGCTGTTTTGGGGAATTTCAATTTCGGCTATGCCTTGGTGTACCCCTCCCCAGTGATCCCTCAACTCAAAAACAGTGATAACCCCCAATTGAGAATGGACACAGAACAGATAGCCTGGTTTGGGTCTATTTTCACACTGGGGGCAGCAGCAGGAGGACTTGGTGCCATGCTTCTGAATGACCTGATTGGCCGGAAGTTGAGCATCATGGTGTCAGCAGTCCCCTCAACAGTAGGGTACATTCTGATGGGAGGGGCACAAGCTACTTGGATGCTACACCTAGGCAGGTTCCTGACTGGTATCGCTGGTGGCATGACTGCTGCTTCCATACCTGTGTATATATCGGAGATCTCCCACCCCAAAGTTAGGGGGGCTTTGGGATCGTGCCCTCAAATCACTGCTGTGTTTGGAGCCCTGTCACTCTATGTCCTTGGGCTGGTGGTTCCATGGCAGTGGCTGGCTGTGGTGGGGGAGATCCCAGCTCTGctcatgctgctgctgctgtgctTCATGCCCAACTCTCCCCGCTACCTCATCATCTGTGGCAAACAGGAGCAGGCCTGCAAGGCCCTGGAGTTTCTGAGGGGGCCCGACTCAGACTTCATGACAGAGTTCAACAGGATTGAACTCAGTATCTCGTCTCAGGGGAGAATCAGGTGGTCCGATTTGACAACAGCATTTTACTACAAGCCCATCCTGATCTCCATAGTGATGAGGTTCCTTCAGCAGATGACTGGCATAACTCCCATCCTGGTGTATCTGGAGCCCATCTTCCACAAGACTGATGTCTTCCTGGAACCTAAGTATGATGCTGCGCTGGTGGGAGCAATTCGACTGCTGTCTGTGGTGATTGCTGCCAGTTTGATGGACAAGGCCGGAAGGAAGGCCCTCCTCTATACCTCAGGGTTCCTGATGTTTCTCGCTACCCTTACAATGAACATGTACTCCCACACCACACCCTGCCCCTCCGGTAACCTGACTGGTACTGTGCTCCCCACAGACCTCATAGCACAGCAGGGGGAAGCTGCCTTCAACACCATCACCCTCATCCCATTAATAAGCACCATGGTCTTTATATTTGGTTATGCTCTGGGATGGGGCCCAATCACTTGGCTTCTGATGTCTGAGATCTTGCCTCTGGGAGCACGGGGGGTCGCGTCAGGCCTGTGTGTGGGGGTCAGCTGGTTGACTGCCTTTGTCTTGAGTCATGTCTTTATTCATGTGGTGGAGACCTATGGACTGTTTGTTCCGTTCCTGTTCTTCTCGGTGGTGTGTGTGGTGAACATAATTTTCACCGCCGTGTGTGTCCCTGAGACCAGGAACAGATCACTGGAGGAGATTGAGAACTATTTCCGGACTGGACGCAGTTTCACCATCATTGACACATAGCACCTCTTTGCTGTTGCTTACTGGAGCATTGTGGACTTCATCAACATGATGCAGTCATTTGTATGAATTGATTTTATTCAGGTGTTCAATTCCgggatttaaatgttttttaaaggACAAAGACACTGTTCTTGGATCTTAATGATATAGTTGTATTAATCACATACATATATTTAATTGTAAAAGGactttacatacatacacatgtaaAAATACCATTGTCTGCCTGTCAACTTCATGTACCTGTAACAAAAGGTTATAGATTTGAACATTGGGAATGGAGGTTAGACTTTTAAGTAACACAGACAAATTAACCATAAACCAGTTTCAGAATTA

Function

GO: NA

KEGG:

id description
K08144 SLC2A6, GLUT6; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU545141 lncRNA upstream 20215 16730340 ~ 16730792 (+) True G479678
TU545057 lncRNA upstream 53720 16694451 ~ 16697287 (+) True G479609
TU544995 lncRNA upstream 99084 16629043 ~ 16651923 (+) True G479564
TU544993 lncRNA upstream 123076 16627506 ~ 16627931 (+) True G479562
TU544978 lncRNA upstream 135512 16615091 ~ 16615495 (+) True G479548
TU545321 lncRNA downstream 99022 16861345 ~ 16863923 (+) True G479841
TU545378 lncRNA downstream 204043 16966366 ~ 16966702 (+) True G479896
TU545379 lncRNA downstream 204417 16966740 ~ 16966978 (+) True G479897
TU545302 lncRNA downstream 207246 16969569 ~ 16970392 (+) True G479823
TU545453 lncRNA downstream 335641 17097964 ~ 17098775 (+) False G479966
XM_036979466.1 mRNA upstream 96814 16637543 ~ 16654193 (+) False LOC110525319
XM_036979465.1 mRNA upstream 96814 16639542 ~ 16654193 (+) True LOC110525319
XM_036979467.1 mRNA upstream 106425 16637544 ~ 16644582 (+) False LOC110525319
XR_005052026.1 mRNA upstream 575992 16168395 ~ 16175015 (+) True LOC118964846
XM_036979451.1 mRNA upstream 867217 15832503 ~ 15883790 (+) False LOC110525313
XM_021605348.2 mRNA downstream 7067 16769390 ~ 16773568 (+) False LOC110525325
XM_036979469.1 mRNA downstream 7067 16769390 ~ 16773568 (+) False LOC110525325
XM_021605349.2 mRNA downstream 7181 16769504 ~ 16773568 (+) True LOC110525325
XM_036979470.1 mRNA downstream 84423 16846746 ~ 16966187 (+) True fibcd1
XM_021605353.2 mRNA downstream 208511 16970834 ~ 16982251 (+) False traf1
TU544659 other upstream 391256 16359416 ~ 16359751 (+) True G479239
TU541393 other upstream 2735443 13997084 ~ 14015564 (+) True G476248
TU541379 other upstream 2765748 13984840 ~ 13985259 (+) True G476234
TU540778 other upstream 3437038 13313679 ~ 13313969 (+) True G475692
TU539960 other upstream 4037709 12712306 ~ 12713298 (+) True G474949
TU545301 other downstream 216859 16979182 ~ 16982220 (+) True traf1
TU545405 other downstream 338663 17100986 ~ 17107427 (+) True dab2ipa
TU545623 other downstream 558451 17320774 ~ 17321165 (+) True G480128
TU545733 other downstream 682430 17444753 ~ 17445931 (+) True G480219
TU545556 other downstream 955547 17717870 ~ 17718201 (+) True G480062

Expression Profile