RNA id: XM_021605348.2


Basic Information

Item Value
RNA id XM_021605348.2
length 1653
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110525325
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16769390 ~ 16773568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTCAAAGAGTTCATCTTCTTGTTCATTCATTGGGTTACACTAAAGTCATGATTTATATAATTATGCAAGTAGCCTACACTCTAGTCCTCAAAAGCGATTGGTCGACCAGAAATAGGAGGATTGTCCCCTGTAGAGCGAATCCCTCATCGCCTGCCATCGACATAGCTCCCATCCGTGAGTTTCGTAAGGGTCTTGTGTAAGGCTGTTGTTACATAGCCTTCAATGGCTATTACATATATATGTAGTAGCTATCTACAGTGTTTCCAAAAGTCCGGGAAAATTGTCAGTCGCTCACGTCGCATGTGAAGATGTATCCAAAAAGAAAAAGTGCATTGGATAGTCAAATTATTTCGGCAGAAATTGCTTTAGGTCTTGTTCTGTGTACAGCATATCGGATCATTTCGAAGAACATTTTCAGTCAACGGGAGGAGAGTCAACCTGTTGACAGTGAAAAGTTTGAGCTAACAAGGTCACTAGTGTGTGTATGGCTTGCAAGCAACATAAAGTTCCTACTCATTAAATGCAACAGCAATCCAGTTTCACTGTCTGCACATTCAACATCCAGGCTGATTGCATTTCTGGCACTTCTACTGGATAGCTGCTACGGAATTAATTATCAGAGACTATATACTAACGAACGGCCTACAGTGGACATGGCCGTGTGTTCTTTCTTCATAGTGAGCAGTGTTGTCCTCTTCTTTTTGGACCACAGCCAGCTGCAGAGCAGAGTGGACTTGCGCATGATCTTCAGTGACTCTCAGAAGTTCTTCCTTCAGATGGACTTTTTTGCCACCTTTGTCTTTGGCCTCCTCTGGCTGGCCTTCCCCGATTGGCTCCTAGGATTCCAGCCCATTACAGGTTCTGAGGACATCTTCCATCTTCACCTCAGTAGAGCCTTTGGCGCCATGATGGTGGGTGACAGTTTTGTCTCTTTTACAACACAGAATTTCCAACCCAACAAAGAAAAGCCATCCGTGTTCATAAGCCGAGCAGTGGGCAGCTTGGTGCTGCTGGTGTTCCTGGTCCACTCTCAGCTGACCACCTCTGCCTGGGCCCCTGCCCAGATCTGGTTTGGCCTGGTGGGAGCCAGCCTCTGGACAGGAAACTCCATCTTAGGTTACCTCAGCTCTAAACAACAAAATATACTGTTAGCCCGCTTAAGTGAAGCTGATCACGTGAGCATGGTTAATCAAACCACAGCTGTTGCACAGAAAGCAGAGGCAGATTCTATGGGAACCTGGAGTGACTTCGAATGAGTGATTATTTATTGTTAAACCATTTCCATCCTATGTTGTTCAGTCTTATGATTTTCATACTTCACCATCAATGAGATGGTGATGGTCATTGCTGACAGAGGTGGAAAGAGACTCTTTGGAAATCTAAATGTctaaatatactgtactgtacatttgtAAATGTGTAACTCCTCTGAGAAGAGGTTAGAAGCCATCGGAGATTGTAAAAGACACTTGACCCTACCATTCCACTGTACAGAAGTGAATAGTAAGTATGCAGGCTCAGCCTTAGAAACATAATTATGAAATAACTTTTTAGGAACTATTGATGGGAAGCGTGGAGGTGTTGTAGCTGCACCCATAGATGTAACTGACATTGAAATTCTGTCAAGGAATAAAAGTGAAGTGAAATGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU545141 lncRNA upstream 38598 16730340 ~ 16730792 (+) True G479678
TU545057 lncRNA upstream 72103 16694451 ~ 16697287 (+) True G479609
TU544995 lncRNA upstream 117467 16629043 ~ 16651923 (+) True G479564
TU544993 lncRNA upstream 141459 16627506 ~ 16627931 (+) True G479562
TU544978 lncRNA upstream 153895 16615091 ~ 16615495 (+) True G479548
TU545321 lncRNA downstream 87777 16861345 ~ 16863923 (+) True G479841
TU545378 lncRNA downstream 192798 16966366 ~ 16966702 (+) True G479896
TU545379 lncRNA downstream 193172 16966740 ~ 16966978 (+) True G479897
TU545302 lncRNA downstream 196001 16969569 ~ 16970392 (+) True G479823
TU545453 lncRNA downstream 324396 17097964 ~ 17098775 (+) False G479966
XM_021605347.2 mRNA upstream 7067 16751007 ~ 16762323 (+) True slc2a6
XM_036979466.1 mRNA upstream 115197 16637543 ~ 16654193 (+) False LOC110525319
XM_036979465.1 mRNA upstream 115197 16639542 ~ 16654193 (+) True LOC110525319
XM_036979467.1 mRNA upstream 124808 16637544 ~ 16644582 (+) False LOC110525319
XR_005052026.1 mRNA upstream 594375 16168395 ~ 16175015 (+) True LOC118964846
XM_036979470.1 mRNA downstream 73178 16846746 ~ 16966187 (+) True fibcd1
XM_021605353.2 mRNA downstream 197266 16970834 ~ 16982251 (+) False traf1
XM_021605354.2 mRNA downstream 197266 16970834 ~ 16982251 (+) False traf1
XM_021605355.2 mRNA downstream 210248 16983816 ~ 17003233 (+) True phf19
XM_021605356.2 mRNA downstream 242528 17016096 ~ 17126012 (+) False dab2ipa
TU544659 other upstream 409639 16359416 ~ 16359751 (+) True G479239
TU541393 other upstream 2753826 13997084 ~ 14015564 (+) True G476248
TU541379 other upstream 2784131 13984840 ~ 13985259 (+) True G476234
TU540778 other upstream 3455421 13313679 ~ 13313969 (+) True G475692
TU539960 other upstream 4056092 12712306 ~ 12713298 (+) True G474949
TU545301 other downstream 205614 16979182 ~ 16982220 (+) True traf1
TU545405 other downstream 327418 17100986 ~ 17107427 (+) True dab2ipa
TU545623 other downstream 547206 17320774 ~ 17321165 (+) True G480128
TU545733 other downstream 671185 17444753 ~ 17445931 (+) True G480219
TU545556 other downstream 944302 17717870 ~ 17718201 (+) True G480062

Expression Profile