RNA id: XM_021605355.2


Basic Information

Item Value
RNA id XM_021605355.2
length 4102
RNA type mRNA
GC content 0.43
exon number 15
gene id phf19
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16983816 ~ 17003233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGATTCGCGGGAAAAAATGAAAAATGGCGACTTGCATAGTTTGAACTTTAGCGCCTGTACACATATTGCAAGAATCGACAACTCCTAGCGAATGGAACGTTACTCAACAGCAGCGACATTATTTCGAGCATTGACCCTGGATTGGAAGTTAACCAAGGCGGAAGAGTAGTAGTGTGGACAGCCCAGCTGCAGCATGTTGCAGTCAGCCTACAGAGATAACTTCTGCAGTGTGGAGCCAGATGAGGTGCTGGAGGCCAAGCATTTACcccagaagagggagagagggcggagCTTCACAGACATGGAAAGCAGCGTGACCGTGGGCCAGTATGTACTGTGCCGCTGGTCTGATGGCCTATACTACCTGGGGAAGATCCAGAGAGTGAGTACCTCCAAGCAGAGCTGCTTTGTCACTTTTGAAGATAATTCAAAATTCTGGGTTCTCTGGAAAGACATCCAACATGCTGGAGTTCCGGGGGAGGAGCCCAAATGCTCAGTCTGTTCCGAAATGGTGCTGGTATCCGACAATGAGATCCTGCTATGTGGGAAATGTGGAATAGGTTACCACCAGCAGTGCCACATGCCACAGGTGGAGAGCTCAATGGTTTTGTCACCATGGTTTTGCAGGAGGTGCATCTTTGTTTTAGCTGTGCGGAAAGGGGGAGCTCTCAAAAAGGGGCCCATAGCAAAAGCACTGCAGGCCATGAAGCAGGTGCTTACCTACAGCCCAGAAGAGCTGGAATGGGATTCCCAGCACCACACAAATCACCAACAGTGTTATTGCTACTGTGGAGGACCTGGAGAgTGGTACTTGAAGATGCTGCAGTGTTTTCGGTGTGAACAGTGGTTCCATGAGGCCTGTATCCAGTGCCTACAGGAGTCCATGATGTTTGGAGATAGGTTTTACTTGTTCATCTGTTCCATGTGTAATAAAGGAGTAGAGTACATCAAGAGACTGGCCCTCCGATGGGTGGACGTGGTGCACTTGGCACTTTACAACCTGGGAGTCCAGAGTAAGAAGAAGTACTTTGAGCTGGAGGAGATCCTCAACTTTGTCAGCAACAACTGGGACCATTTCCAGTTGGGCAAGCTCTCCAATACTCCTCCAACAGAAAGAGGCCAATATCTCCTTGATGCTCTGAACAACTACAAGAGCAAGTTTCTCTGTGGGAAGGAGATCAAGAAGAGGAAATGCATCTTCCGCCTGAGGACCCGCGTTCCCCCCAACCCTCCCTCTAAACTGTTTCCTGAGAGGGCTCAGAACGAGGGATGGAGAGGACGAAAGAAAGGCACAGGCAGGAACAGCTCTCTCCCtgcagagaagaggaggaagagaagatcAAAATGGCTGCTGGAGGACGCCATCCCCAATAATGACCTGACCTCCACCTGGAGCACCAACCATCACATGGCCAACATCTTTGACTTCACCTTGGACGAGTTACAAAGTCTCAAAAGCACCAGCTCAGGACGGACCTTCAGTCTGGACCTGGACTCCACAGACGCGGCTAGTACCACCGGATCTGCTACCACCAGTGTCTCCTATGACCTCAGGAAGAATGTTGGCAGCCGTAAGAGGAAGCTGCCCACCTCAAACTACACGGTGCTGGCCACTAAGAAGGAGGTGGTGGAGAACGAGCTGAGCCCTATGGAGCAGAGCCTGCCGGGAGAGGAGACGGCCTCCGTGATGCTGGACAACGCCATCGACAGCCACACCTTCGACAGCATCAGTGAGGACGACTCATCCCTCTCCCACCTCAAGTCCTCCATCACCAACTACTTTGGGGCGGCGGGGCGGCTCACCTGTGGAGAGAAGTACCAGGTGCTGGCCCGCCGGGTCACTCTGGAGGGGAAGGTGCAGTATCTGGTGGAGTGGGAGGGCACCACGCCCTACTGACCTGGCCAACCAGACAGGCTGTCTTCAGTTAGGTGTTGCAGAGAAGGGGGGAATAAACGGCAAGATCAGCCTAGCAAGGCCTACCTAGTTGTACTCATttaattgtttcatgttgcttTCTCTTGCGCTACAGTACTATTTCAGTATATATGACAAGTAAAAATGGTTGTTCTCTTCCACCATAGCTAAGGTTTTTATTAGTTAATTTGAAATTCAACCGGAATGTATTGAACAGAAACGTAAAGATTGAgtacgttttttttttatagatacATTGTCTGTTTGGTAGTGTCCTCAATAATTTTCAACAGTAACACAGCCTGAAAAATAGTCCCATGGGGCACAGATGTAAATTCACCGGCTATTCCACGTTATTTTGTTGATTCAACCAATGTGTGCCTGTTGGGGTTTGCCTTGGTCTTAACCGGATGATAGTTTGAGTAGAAGATTTGTGATGGTACTGTAAAGGTAACATGAGATATGGCCCAGGGGTACAAGAAATAACAATACCACTGATTCTAAAGGATGGCAGCAAAACTGATGAAAGAGCACTGCTAAAATGGTCTGTCAGTGTCCCTAAATTCAATTCAGACAACTTCCAATAATATTCTGCTCTACTAATAGTTTTTcagtgttttttaaaaatgttttaccttatGTTTTGAATAGTTTCTCTTAACAGCAATATGCCATATCCAAGCAACATTTAATATGCCATATCCAAGCAACATTTAACTTGTAGCAAGTTATACCTTTGTCATTGTTGTGCCTCTCCACTGATCAATGAAACCGCAGTTTAACAGCTTTATCTACGCAGTACTGTAATGCCAAGTCTAAAAGCTGAGTAACAAACACATGTTTTTATGAATTATCACTTAACAGTCGGTTTATACTTGGTCCTTTAATTTTCAAATGTGTTTAGAGAGAGTTTTTCCGGATGGTTAGGGGGACAAGAGACCAAAGCAAATACTACAAGCATTTCTGATAGTGTTCCTGGTTTTCCTTTTATCTCTAGTGGTTTATGCTGACATAGGTAGTTTGGCTTACGTAGATGCAAAACTGTTGTATTTAATGGTAATTCAAGGTAGAGGATGGAGAACTTATTTTAACATAGTACTTTTAGACACTGTAAGATCTTTTTTGACATTTGAAATATAGAAAGTTAGAATGAGAATATTCCTTTAGTCATGGACTTTAAGGGGGAGTCTTGGTCTATGCTCTAACAATATCCAAAGATGACTTTATATATTACTCTCCCACCTATAGATATTTCTGTTTCCTCAAGACATGTATTTGTTTTGTTCCAGACTTGGATATCTTTTCGCTGACAGTGAAACCTGGGGCTGTGTACATTAGGGGGCactcagtggggggggggggggggaagaattTAACGGAAAACAAAAATGAGCATTTAGGCCTATTTATTTGACACGCCCAGGTAATCCCTCCGTTTCATTTAGATTTCTTCGGATCGTGCGTAATGAACAGGATACAGAATCTTTCGACCTTGATAAATATGATTCGATATCAATACGTCAGTCATGAAAGATAAATGACGCTTTCCTATTAACAGTTCTGTTAATGTACATCACCCTCTATACGTCATTGCACTATTGACACATCTTAAACTATGcaagtatgtttttttttaaattgatgttACTAAATAaccaaatattatttacaatatAGTTTTAATTGATTATTCTGTAAATTTGTGATCAGAAGTCACATGCTATATATGCGTTATATTATTAATAAGCAAAGTTTTAAGCTACTTGTAATATGTTTCCCCTTTAGCATTTTGCAACTGTTTATGCACTTACTTTCCTTCAAATTACAGTATGACTGTATTCACTCAAACAGTTTATATTATGAGTAGATTCATATCTATCCTCTGGAGTTTCCATTTTATGGATGATTCTTGAATAGTGACACTTCAATGGTAAACTGTGTGCAACATAAAAGTTTGACTTTAGTTGtattttaaatcaaataaaatgcatCTTTAAACATGAATGACTGTATAATAGTTGTTTTGCCATGTTACATGCCCAGAGCTGTGTATATAGAGAACTTCCTGTGTACTGTACATTTACCCCTATTTCCTATGCTTGTTAGAAATGTTAACTGTTACATCTCTCAGCGGGCATTATGCATCCTTATTTGTCATTCATTAAACTTTTATTTGGTCTTTCGAA

Function

GO: NA

KEGG:

id description
K11486 PHF19, PCL3; PHD finger protein 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU545302 lncRNA upstream 13424 16969569 ~ 16970392 (+) True G479823
TU545379 lncRNA upstream 16838 16966740 ~ 16966978 (+) True G479897
TU545378 lncRNA upstream 17114 16966366 ~ 16966702 (+) True G479896
TU545321 lncRNA upstream 119893 16861345 ~ 16863923 (+) True G479841
TU545141 lncRNA upstream 253024 16730340 ~ 16730792 (+) True G479678
TU545453 lncRNA downstream 94731 17097964 ~ 17098775 (+) False G479966
TU545454 lncRNA downstream 94731 17097964 ~ 17098959 (+) True G479966
TU545550 lncRNA downstream 315817 17319050 ~ 17319198 (+) True G480058
TU545621 lncRNA downstream 316802 17320035 ~ 17320254 (+) True G480126
TU545643 lncRNA downstream 320472 17323705 ~ 17323942 (+) True G480134
XM_021605353.2 mRNA upstream 1565 16970834 ~ 16982251 (+) False traf1
XM_021605354.2 mRNA upstream 1565 16970834 ~ 16982251 (+) False traf1
XM_036979470.1 mRNA upstream 17629 16846746 ~ 16966187 (+) True fibcd1
XM_021605348.2 mRNA upstream 210248 16769390 ~ 16773568 (+) False LOC110525325
XM_036979469.1 mRNA upstream 210248 16769390 ~ 16773568 (+) False LOC110525325
XM_021605356.2 mRNA downstream 12863 17016096 ~ 17126012 (+) False dab2ipa
XM_021605358.2 mRNA downstream 81883 17085116 ~ 17125675 (+) False dab2ipa
XR_005052027.1 mRNA downstream 123722 17126955 ~ 17131300 (+) True LOC118964847
XM_021605363.2 mRNA downstream 222332 17225565 ~ 17318854 (+) False med27
XM_021605362.2 mRNA downstream 222336 17225569 ~ 17318854 (+) True med27
TU545301 other upstream 1596 16979182 ~ 16982220 (+) True traf1
TU544659 other upstream 624065 16359416 ~ 16359751 (+) True G479239
TU541393 other upstream 2968252 13997084 ~ 14015564 (+) True G476248
TU541379 other upstream 2998557 13984840 ~ 13985259 (+) True G476234
TU540778 other upstream 3669847 13313679 ~ 13313969 (+) True G475692
TU545405 other downstream 97753 17100986 ~ 17107427 (+) True dab2ipa
TU545623 other downstream 317541 17320774 ~ 17321165 (+) True G480128
TU545733 other downstream 441520 17444753 ~ 17445931 (+) True G480219
TU545556 other downstream 714637 17717870 ~ 17718201 (+) True G480062
TU546627 other downstream 911527 17914760 ~ 17978399 (+) False LOC110525363

Expression Profile