Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021605362.2 |
| length | 2073 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 8 |
| gene id | med27 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 17225565 ~ 17318854 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0046549 | retinal cone cell development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| id | description |
|---|---|
| K15170 | MED27; mediator of RNA polymerase II transcription subunit 27 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU545454 | lncRNA | upstream | 126610 | 17097964 ~ 17098959 (+) | True | G479966 |
| TU545453 | lncRNA | upstream | 126794 | 17097964 ~ 17098775 (+) | False | G479966 |
| TU545302 | lncRNA | upstream | 255177 | 16969569 ~ 16970392 (+) | True | G479823 |
| TU545379 | lncRNA | upstream | 258591 | 16966740 ~ 16966978 (+) | True | G479897 |
| TU545378 | lncRNA | upstream | 258867 | 16966366 ~ 16966702 (+) | True | G479896 |
| TU545550 | lncRNA | downstream | 196 | 17319050 ~ 17319198 (+) | True | G480058 |
| TU545621 | lncRNA | downstream | 1181 | 17320035 ~ 17320254 (+) | True | G480126 |
| TU545643 | lncRNA | downstream | 4851 | 17323705 ~ 17323942 (+) | True | G480134 |
| TU545647 | lncRNA | downstream | 9664 | 17328518 ~ 17328718 (+) | True | G480138 |
| TU545648 | lncRNA | downstream | 9897 | 17328751 ~ 17328972 (+) | True | G480139 |
| XR_005052027.1 | mRNA | upstream | 94269 | 17126955 ~ 17131300 (+) | True | LOC118964847 |
| XM_021605356.2 | mRNA | upstream | 99557 | 17016096 ~ 17126012 (+) | False | dab2ipa |
| XM_021605358.2 | mRNA | upstream | 99894 | 17085116 ~ 17125675 (+) | False | dab2ipa |
| XM_021605355.2 | mRNA | upstream | 222336 | 16983816 ~ 17003233 (+) | True | phf19 |
| XM_021605354.2 | mRNA | upstream | 243318 | 16970834 ~ 16982251 (+) | False | traf1 |
| XM_036979473.1 | mRNA | downstream | 41898 | 17360752 ~ 17412856 (+) | False | LOC110525335 |
| XM_036979474.1 | mRNA | downstream | 41898 | 17360752 ~ 17412856 (+) | False | LOC110525335 |
| XM_036979475.1 | mRNA | downstream | 41898 | 17360752 ~ 17412856 (+) | False | LOC110525335 |
| XM_036979476.1 | mRNA | downstream | 41899 | 17360753 ~ 17412856 (+) | False | LOC110525335 |
| XM_036979477.1 | mRNA | downstream | 41899 | 17360753 ~ 17412856 (+) | True | LOC110525335 |
| TU545405 | other | upstream | 118142 | 17100986 ~ 17107427 (+) | True | dab2ipa |
| TU545301 | other | upstream | 243349 | 16979182 ~ 16982220 (+) | True | traf1 |
| TU544659 | other | upstream | 865818 | 16359416 ~ 16359751 (+) | True | G479239 |
| TU541393 | other | upstream | 3210005 | 13997084 ~ 14015564 (+) | True | G476248 |
| TU541379 | other | upstream | 3240310 | 13984840 ~ 13985259 (+) | True | G476234 |
| TU545623 | other | downstream | 1920 | 17320774 ~ 17321165 (+) | True | G480128 |
| TU545733 | other | downstream | 125899 | 17444753 ~ 17445931 (+) | True | G480219 |
| TU545556 | other | downstream | 399016 | 17717870 ~ 17718201 (+) | True | G480062 |
| TU546627 | other | downstream | 595906 | 17914760 ~ 17978399 (+) | False | LOC110525363 |
| TU546849 | other | downstream | 965943 | 18284797 ~ 18285312 (+) | True | G481201 |
