RNA id: XM_021605375.2


Basic Information

Item Value
RNA id XM_021605375.2
length 2784
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110525341
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 17488588 ~ 17496137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAAATCCTAAACTTCTCACTTGCTTAAATTCAGGTGACGtaaaatgaaaaacaaacaaaacttttCCCATGAGTCTCGAGAAATCCAATTTCCCCGGCAAATCTACACGTGCCGCGATTAATTCGAAATCCCGACCACGACAGAGGAGAAATATTGACCATGTCCCAAGAGAAGCCAGACGCTTGCAGCCAGACCCAGTCGCAGCCTCAGACCCAGTCCCAGAGTGGCTCCAGCTCCTCCTCTGCTCCAGGCTCTGCCAGCCAGTCATCCTCTGGGTCTGGCACAGTCAGTTCTGTGGACACCATCCCCGTTAGGGACCTGGGTTCCATACCAGAGGAGCATGAGCCACAGCCCTGGGGCCTCCTGCTGCCTATGCAGAGAGGCTTCAGAGCCCACAACTGTGTTGAGGACGACGCTTGGTTTGGCCGGCACACTAAATGCAACTATTCCTTTGATGTCCCCATACTGAGGAATTCGTCCAGATTTGCTGCATACAGCAATAAACACTTTAGGATATTCCGAGAGAAGAACATTGTCTATGTCTTTGACAACAGTAACAATGGCACGTTTGTTGACGGTAAAATGATTGGAAAAGGAAAAATGTTGCCACTAGCGAACAATGCAGTGTTGTCCCTTGCTGAAGAACGCCACAAAGTGTTTGTGTTCATTGATCTCATGGTGGATGAGCAGTCCAACCTACCCAAAGAGTTAAGCGAGAAATACATGATCACCAAAAAGATTGGAGTTGGTGTGTGTGGGGAAGTGAAGCTGGCTTTTGAGAGGGCCACTTGCAAAAAGGTGGCCTTGAAGACTATCAACAAGAAAGATTTCCCGGCATCTGTTGGCACTGCCACGCGAAGTGCAGAACGAGAGATCCAGATTCTTCAAAAGATTGACCATCCTTGTCTGATCAAAACAAAAGACTTCTTCCAAACAGATGACTCATACTACATTGTTTTAGAGCTcatgGAGGGTGGGGAACTCTACGACCGGGTCAAAAGCAAGCAACAGATCAAGGAGCCAATTGCCAAGCTATATTTTTACCAGATGTTGAAAGCAGTAGAGTACCTTCACAACAATGGCATCATCCACAGAGACCTCAAACCTGAAAATGTGCTGCTTTCGTCTCACGACGATGTTTGCATCATCAAGaTCACAGACTTTAATCAGTCCAAGATACTGGAGGAGTCTGCCCTGATGAGGACCCTTTGTGGAACACCCACATACCTGGCACCAGAGGTGTTTACAGACGCAGTCACTgtgggctacagcagggctgtAGACGCCTGGAGTTTAGGGGTCGTCCTGTTTGTGTGTTTGGCAGGCTATCCCCCATTCTACCCGAATGCACGAATTGGTTTGTCAGTCAGTGATCAGATCACCCAGGGAATATATACATTTATTCCATCAAAATGGGACGGCATCTCCGATGATGCCAAAGATGTTGTGAAGAAACTGCTTCGAGTGGACCCCAATGCCCGCCTCACCATTGAGGAGGCATTACAGCATCCCTGGCTGATGGATGAGGCAATGAAGGAGACCGCTGAAGGCATCATGTACCCCAAGGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCACAGCCTCAATTGGAAAGAGGTCAAGAGATGATAAGGAGGAGCAGCAGCCAACAAAGAGGTGACCAGGCCCATCCACAGAAGCAACATGAGCCACATTCCACCCTCGTCGCCCCATTGGAGACTCCCCTGATATTTTTCTTCTGGCAATTAGGCCTACTTGAAATCAGTATATTGCATTTCAACACCGATCACTGTAACCATTCCCACATGTCCCTGTTCAGGATAGTGCAATCAACTGGAATTTACTTGATTACTGCATGTTGAGTTTCAACTCATGGGCACATGCGGAGCTAGCTCCACATTGTTACGATGGTGATATGTGAATACTTCCATACAGCAGTTATACATTAGCTAGTGTAAAGCATAGCAGGTACATTTTCAACTAACCAGTTCTTGGCGATACTTTTGTCATTCTCAATTCTGGAGAAAAGTATTTTCTCGATGTCCAGTTGCAGGTGGTTCTCCAAAAATATATTAAATCCACGTTTGCACCGAGTGAGGAGTTCCCTCGCCATTTGATCTGCATCTTGTGTTTCCCCAAGAGCTTTGCAGGAACTAGATGTTTCGATGTGACACGGCCACATGTAGGCGACGGAGCGTCACACAGTGGGACCAAAACAAATATCTGCAGACATACAAGAGGCATTTGCATTTCTCACTCGATACAAAACGTGGATTTAATATCTGTTTGAATATTAATTTTTTTAGGGGAGAACCACCTGCAACTGGACATTTTATAAGATGTACTTTTCTCCTATATCAAGAACAAAGAAAGTATCACCAAGAACAGGTTAGTTGAAAATTGGCCTGCTATGCCTTATACTAGCTAATGTGTAATGTATGGAAGCATTCATAGATCAGCGCAACAATGTGGAGCTATGTCTACTGGAAATTGCCTCCTGTTTTGTAAATTGTTTTTGTACAAAAATGTTATTTTCCACTGGGTTTTTATTGTTGTGCATCCCATAATTCTTGATTTGTATATCATAAAAAAAATCTTACTTTATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU545758 lncRNA upstream 7754 17479515 ~ 17480834 (+) True G480244
TU545744 lncRNA upstream 23435 17464534 ~ 17465153 (+) True G480230
TU545738 lncRNA upstream 36507 17451583 ~ 17452081 (+) True G480224
TU545737 lncRNA upstream 37585 17450678 ~ 17451003 (+) True G480223
TU545735 lncRNA upstream 38741 17449560 ~ 17449847 (+) True G480221
TU545732 lncRNA downstream 820 17496957 ~ 17497499 (+) True G480218
TU545764 lncRNA downstream 3224 17499361 ~ 17499802 (+) True G480250
TU545825 lncRNA downstream 83706 17579843 ~ 17580044 (+) True G480304
TU545830 lncRNA downstream 87316 17583453 ~ 17583685 (+) True G480309
TU545832 lncRNA downstream 91556 17587693 ~ 17587971 (+) True G480311
XM_036979473.1 mRNA upstream 75732 17360752 ~ 17412856 (+) False LOC110525335
XR_005052029.1 mRNA downstream 30161 17526298 ~ 17534335 (+) False LOC110525345
XR_002473739.2 mRNA downstream 30167 17526304 ~ 17534335 (+) True LOC110525345
XM_021605385.2 mRNA downstream 140831 17636968 ~ 17643111 (+) True LOC110525350
XM_036979490.1 mRNA downstream 160929 17657066 ~ 17710433 (+) False LOC110525352
XM_036979491.1 mRNA downstream 160929 17657066 ~ 17710445 (+) False LOC110525352
TU545733 other upstream 42657 17444753 ~ 17445931 (+) True G480219
TU545623 other upstream 167423 17320774 ~ 17321165 (+) True G480128
TU545405 other upstream 381161 17100986 ~ 17107427 (+) True dab2ipa
TU545301 other upstream 506368 16979182 ~ 16982220 (+) True traf1
TU544659 other upstream 1128837 16359416 ~ 16359751 (+) True G479239
TU545556 other downstream 221733 17717870 ~ 17718201 (+) True G480062
TU546627 other downstream 418623 17914760 ~ 17978399 (+) False LOC110525363
TU546849 other downstream 788660 18284797 ~ 18285312 (+) True G481201
TU546853 other downstream 794096 18290233 ~ 18290467 (+) True G481205
TU546804 other downstream 839195 18335332 ~ 18340566 (+) True G481159

Expression Profile