RNA id: TU545730


Basic Information

Item Value
RNA id TU545730
length 276
lncRNA type read_through
GC content 0.47
exon number 1
gene id LOC110525341
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 17488588 ~ 17496137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGAGGAGCAGCAGCCAACAAAGAGGTGACCAGGCCCATCCACAGAAGCAACATGAGCCACATTCCACCCTCGTCGCCCCATTGGAGACTCCCCTGATATTTTTCTTCTGGCAATTAGGCCTACTTGAAATCAGTATATTGCATTTCAACACCGATCACTGTAACCATTCCCACATGTCCCTGTTCAGGATAGTGCAATCAACTGGAATTTACTTGATTACTGCATGTTGAGTTTCAACTCATGGGCACATGCGGAGCTAGCTCCACATTGTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU545758 lncRNA upstream 14325 17479515 ~ 17480834 (+) True G480244
TU545744 lncRNA upstream 30006 17464534 ~ 17465153 (+) True G480230
TU545738 lncRNA upstream 43078 17451583 ~ 17452081 (+) True G480224
TU545737 lncRNA upstream 44156 17450678 ~ 17451003 (+) True G480223
TU545735 lncRNA upstream 45312 17449560 ~ 17449847 (+) True G480221
TU545731 lncRNA downstream 170 17495604 ~ 17495861 (+) True LOC110525341
TU545732 lncRNA downstream 1523 17496957 ~ 17497499 (+) True G480218
TU545764 lncRNA downstream 3927 17499361 ~ 17499802 (+) True G480250
TU545825 lncRNA downstream 84409 17579843 ~ 17580044 (+) True G480304
TU545830 lncRNA downstream 88019 17583453 ~ 17583685 (+) True G480309
XM_036979473.1 mRNA upstream 82303 17360752 ~ 17412856 (+) False LOC110525335
XR_005052029.1 mRNA downstream 30864 17526298 ~ 17534335 (+) False LOC110525345
XR_002473739.2 mRNA downstream 30870 17526304 ~ 17534335 (+) True LOC110525345
XM_021605385.2 mRNA downstream 141534 17636968 ~ 17643111 (+) True LOC110525350
XM_036979490.1 mRNA downstream 161632 17657066 ~ 17710433 (+) False LOC110525352
XM_036979491.1 mRNA downstream 161632 17657066 ~ 17710445 (+) False LOC110525352
TU545733 other upstream 49228 17444753 ~ 17445931 (+) True G480219
TU545623 other upstream 173994 17320774 ~ 17321165 (+) True G480128
TU545405 other upstream 387732 17100986 ~ 17107427 (+) True dab2ipa
TU545301 other upstream 512939 16979182 ~ 16982220 (+) True traf1
TU544659 other upstream 1135408 16359416 ~ 16359751 (+) True G479239
TU545556 other downstream 222436 17717870 ~ 17718201 (+) True G480062
TU546627 other downstream 419326 17914760 ~ 17978399 (+) False LOC110525363
TU546849 other downstream 789363 18284797 ~ 18285312 (+) True G481201
TU546853 other downstream 794799 18290233 ~ 18290467 (+) True G481205
TU546804 other downstream 839898 18335332 ~ 18340566 (+) True G481159

Expression Profile