RNA id: XR_005052029.1


Basic Information

Item Value
RNA id XR_005052029.1
length 4664
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110525345
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 17526298 ~ 17534335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGCTGGTTTATACTGTTGTTTATGATGCGTTTCTCTATTTGCTTGCCACTATTCAGTACACCTAGCAGTGAAGGGTGATTGAGCAGTTGTCAGAACAGAAAATGTGTACTCACTCCTGTGGAACAGGTGTTTTATAAAACAATATGCCTAGTATCATTGCCACAGAGTGTTGGTACACCAGTCTTTAATCAAACTCCTGTCAAGACGTTATTTGTTTTGACAGCCATCGGTTTGGTCCAACTCTGGTTGTGTATACTTATACTACATTACTCTGGGGCCATATGTATCAAACTACGATCAGCTacacctgtccatgtaatctgattcattgtgatctaaaaaggcaaaactgatcctaaatcagagCTCCTACTTCGAGATGCTTGATACATACACGTCCTGTGCTGCCCCTCAGGGCCGCCTTGTCTAGCAGTGTTGGGTGATGCTGCATTTTTGCAGCCTTTGGCCTTTTCCTGGTGCACTGGATATGGCGGGTATGTAACCCTCTGTCTGAGGCGGCCAGCCCAGCGCTAGCAGGGCCAGAATAGAATGTCTCTTTCTTTACCTTTTCATCTTTCAAGAGGCTTATTACGGCTGCTTACAATGAAGTCCTCTATTAAAGGAACATGTCTGTACCCAATCTATCTGATTGGCTATTTTTAGAGTTTCTTATATAATGACAAGTAGCACAAGTTGTCTCTTGTCTGTCAACCCCTATAGGGGCAGACACAGGTGTCTGCGCAGGATCCTTAATGTCTTATAACTGGACCCTACTGGAGTGCAGTAACAGGAGCTCAAACTCGGTAACTGTGTTTGACATGCAGCCCGGTTGTGTCGTTGAAGGGACCTTGCCCGTGAGTCTTGGTTGAGTTGTGAATGGAGACAAGTCCTGTTGGTGGAAATCTATGGAGACGTCTCGTCTCGAGCCGCTGGGGAGATTGATGCATTAGAAGAGCGAGCAAAGAGCAGGCATGTTGATGCAGGAGAATGTTGGGAATGCTGATGTGCACCAGCAGCACAAGGCTGTGATAACCcaatgggggaggaggaggggaggtatGTGTCTCTCAACATTCATCCATCCTGTTCTGATACTGAGGGAAGGGGTTGGCCGGAGGGGGAGGGTCTGTCATAGCTACATTTAATgtgtatgcatatgtgtgtgtgtatgtggagtcATGTTACCCCCGCTGTGCGTTGCTTCACAGTCGTTCTTCACTGGCTAGCTTTATGTCTCCCTCCCCGCcgtaaagctgccagttgaagagcTGTTGTGGGTAACTATGACTACAGAACTCTGCAGATGGGGATGTTAAGACATGATTCAATCTAATTCAGGGCCCCTGATACCCCTCAGGTCAAGGACAAATCTACAGTTTTATACAGAGCAATCACTGAATGGAATTCTTTACTAACTCACATTTTTCAGGCCAAAAGTAAATCCACCTTCAAGAAAACAATAAAAGTACATCTAATGTGATCGACCGTATTACTGGACAGAGACTAGAGAGCATCTACTGAATATAAAATGTATTACCTGTCAGGTATTTTAATTGTATGTAATGTCTAATTGTTAAATGTTTATAATGTCTTAATGACAATTGCAATTGTTTGTAATGTATTTTTAGTtctgtgttggaccccaggaagattagctgacGTTATGCCgtcaactaatggggatcccagaGTCAAATTGAGGGTTGATCGATGAGGACATGTTTTTGCCTGAGGAGTGGGTCAAACAATGTGTACTAGCACTGGATCAAAACAGAGGGTTATTGAAGTAGTTTACAAATGATGAATCATAATTGTTACTGCAGGAGAATGCAAAATCATTTAGTTTAACGATTTTGTTTGGACAGTTCTTGCATTCTCGCAGACTAGGGCCACAACCTCGAGTTTCCAAGTATTGACTGCACTGCGGCTTTATGGGTAACAAATAAAACAGACATTGGAGCTGACAGCCTTCAGCAGGACTCCACTTCTTATTTATCACCTACACATTCTCCAGAAGGGCCACACTTTAGTCCAGAATCCAGTTCTGTATGTATGCACACTGCCAGTCCCAATTCACCCCTTCCTCTTGGACTCTAACCCGCTAATGTTTGCAGATATGTAAGGTGGAAGCAATATGGTGGAAGCTCCACCACTACACTGCTTATACCTATCCATATACTACAGATCTGCTAACGTTAAAGGGTTAGGTCCAACGGGGAGGGGTAGGGAGCGAATTGGGGCCAGCTGACCCAGTTGGCGTGTGTTGTCGATGTTACGGACTACCTGTCTGCTGAGATCTCCACCCTCAAGCAGAAGAAGTTCAACATGGTGACGTTCGCGGACATCCCGGGCCTGTTGAACCGGGACAGGCCTCCCTTTGATGTCAACTGCGCTATCACCTCATTTGGGGAGCAGGCAGACCTGGTTTTGTGTTCTTTGACCCCATGGGCCGGGCGCCGTGCAAGCGCACGCTCAACATCATGAAGAAACTTAGCGATAAGATTGCGTACAAGCTGCGATTCTACCTCAGCAAGGCAGACGAAGCCGGGAGGGAGCTGGACAGACAGAATCACCACAACAATTGGCGATGAGGATGGGACGCTAACTCCGCTTACTGATCGTTCCTGAGGAGACCGAGGTTAACTGCGCACAGGGGCTACAGTAGACGCGGCTCAGGggactcctgagaaaaccCGCAAACCAGGCTGTCATCATGAGACACAGTGGAAAGAATccagctagctaaagcatttactgcaaattgaatgtacaattgtgtaagcttgccttgccgTGCAATGCAGCggaagtaacatagctagctaactatttaacGGTAACtaactcacttttgtacatcgcacTGGTCCGTGCAATTGACCTTACTTTAGCAcccaaaaaacgtaatacttccagatcaactgtaatatcaataccattgtaaagcacaatttctcccctctTTAACAAACCAATGATGAGACCTTCATGATGCCCATCTCtgcatgattcaagaaggcaatgagctccgtcgggtctttttaaaaatggcaggtggggaagcgaaacctaCTGCATAAAGGGGAAACATATTTTTTCacctgtccaacttatcaccttatcacctctaaaatgaaaataaaacactGTAAAGAGTTTATATAACTTGTTATTCCATACCTATTTgtaggtttgtgtcgaatttgaattgGGTTTTTAGGTCGGCGCTAAAGttatcttcagaagtaaacagcggcttttgagagtcatgatGGCTTGCAGTTatgacgcaaaaaatgactaggtaatGTTATCCCCCTTACCCTGTCCTTTTCTTATTTTTAAGCGGTGAGATAagcgctacacctggtggagaggcTGTAAGACACAGAATTAGTTGGTTTACGTGTGCTGTACGTTACGTCATGACACGACACAATTTAAAGTACAGCGTTGGAGTGGTCCGTTTTTTCAACTTTCACTCCAATACCATTGAtccattaccatgtcaatcaacacatgaatagaaacgtagttcacatCCCAGATTTTGATGTCAACACAGTTGCtgcagtcccattagttttcattgcagcctcgtttgaatgtcgtGGTTGCTcaaatttgtacggaatggggttagTCACCAttacttgcttattgtgtagtggaggataagaataactgtatgcctatggatgtgtagctagctacagtatgtagccgatctgtgtatggtCCCTAAAAtgttaggttctgaactaatattcataccaatctatgaacctcagctatcatagttgttgcatcaacttcaagtctgaatggcattaatgaagcctatggattgagtagaatataataactttattgtgccaaggatgcaagtcctatatacatgtactgtagttattaccacgcATGAGATCCCAACATTgaagcctgtacattgaatatattcactgatcatgtactcttccttggcaattaaaggtgcagttcaggtatgaatctctgtgagacattctttttcagtcatatccaataccaggtgtatcaaactccattcATTGAATGATGCTCTGTCTGCATGTATGTactacaattatacacttcaacagtgtttaccacttcTGCACCTGGGGCATCAATGATTACCCATTGTAGCTATGCAATAGAGAAGAAACGTGATTtaagtaaaggctgatttgtaattcatatatacagaaatacaCCTATTcatatctaactcccttcatctgcattaatctgatgacacaggataggtgtagtattccaatgagatacttaatttcaaccagtggagaatgtgaaatgCTTTATTGAAAGTTCATTATCTAAGTTCAAGCtatacttcaatgcacatatggtgtgcGTTATAAAAAAGGGGAAGAAataggaggtggggagagaggtgtagaagacaggaAACAAAAGAGGTAAAACAGAGGAGCAGGGAAGACAGCATATGAtgaatgaattacagtgctaccctaatattctctcagttcatctcAATTACATAGTGTCTCTtgcggtgtctcctaaccagccttgggctccCAGTCGGCCcaaaggttatcttaagagcgggtgaggtggcaatgacgggactggcttcctctctcacatcaaaacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU545764 lncRNA upstream 26496 17499361 ~ 17499802 (+) True G480250
TU545732 lncRNA upstream 28799 17496957 ~ 17497499 (+) True G480218
TU545731 lncRNA upstream 30437 17495604 ~ 17495861 (+) True LOC110525341
TU545730 lncRNA upstream 30864 17495159 ~ 17495434 (+) False LOC110525341
TU545758 lncRNA upstream 45464 17479515 ~ 17480834 (+) True G480244
TU545825 lncRNA downstream 45508 17579843 ~ 17580044 (+) True G480304
TU545830 lncRNA downstream 49118 17583453 ~ 17583685 (+) True G480309
TU545832 lncRNA downstream 53358 17587693 ~ 17587971 (+) True G480311
TU545834 lncRNA downstream 54578 17588913 ~ 17589136 (+) True G480313
TU545839 lncRNA downstream 62978 17597313 ~ 17597583 (+) True G480318
XM_021605374.2 mRNA upstream 30161 17488588 ~ 17496137 (+) False LOC110525341
XM_021605375.2 mRNA upstream 30161 17488588 ~ 17496137 (+) False LOC110525341
XM_036979473.1 mRNA upstream 113442 17360752 ~ 17412856 (+) False LOC110525335
XM_021605385.2 mRNA downstream 102633 17636968 ~ 17643111 (+) True LOC110525350
XM_036979490.1 mRNA downstream 122731 17657066 ~ 17710433 (+) False LOC110525352
XM_036979491.1 mRNA downstream 122731 17657066 ~ 17710445 (+) False LOC110525352
XM_021605386.2 mRNA downstream 122749 17657084 ~ 17715306 (+) False LOC110525352
XM_036979485.1 mRNA downstream 122749 17657084 ~ 17715306 (+) False LOC110525352
TU545733 other upstream 80367 17444753 ~ 17445931 (+) True G480219
TU545623 other upstream 205133 17320774 ~ 17321165 (+) True G480128
TU545405 other upstream 418871 17100986 ~ 17107427 (+) True dab2ipa
TU545301 other upstream 544078 16979182 ~ 16982220 (+) True traf1
TU544659 other upstream 1166547 16359416 ~ 16359751 (+) True G479239
TU545556 other downstream 183535 17717870 ~ 17718201 (+) True G480062
TU546627 other downstream 380425 17914760 ~ 17978399 (+) False LOC110525363
TU546849 other downstream 750462 18284797 ~ 18285312 (+) True G481201
TU546853 other downstream 755898 18290233 ~ 18290467 (+) True G481205
TU546804 other downstream 800997 18335332 ~ 18340566 (+) True G481159

Expression Profile