RNA id: XM_021605444.2


Basic Information

Item Value
RNA id XM_021605444.2
length 2654
RNA type mRNA
GC content 0.52
exon number 23
gene id naa35
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 18432515 ~ 18444766 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcacactccagtacagtagatggcggtaatgcaccatCACGTTGGATGCCAACAGCCGATAAACCCCGCCGAAGAAGGAGGAGCAGCCTCGGACGACTTTCTAGCAGCGCTAGCAGTTAGCAAGCTGTAACCATGGTGATGAAGTCATCAGTAGAGGATGACGATGTAGGATGGGGATTGGGTGTCCCAGAGAAGATGAGGAACAATGCAAACTGGGTGGACATTACACATGAATTTAAAGGGGCATGCAAAGAGCTCAACCTTGGGGAGTTGCTCCATGACAAGTTCAGGTTTGGCCTGTTCGAGGCTATGTCTGCCATTGAGATGATGGACCCCAAGATGGACGCAGGGATGATTGGTAATCAGGTCAACAGGAAAGTCCTCAACTTTGAACAGGCAGTCAAGGATGGTGCTATCAGAGTGAGGGACCTCAGTCTTCCTGAGCTGATTGGGATCATGGACACCTGTTTCTGCTGCTTGATCACCTGGCTGGAGGGTCACTCCCTAGCCCAGACAGTGTTCACCTGCCTCTATGTCCACAACCCCGACCTGATCGAGGACCCTGCCCTCAAGGCCTTCACTCTGGGCATCCTCAAGGTGTGCGACATCGCCCGCGAGAAGGTCAACAAAGCCGCCGTGTTCGAGGAGGAAGATTTCCAGGCCATGACGTACGGCTTCAAGATGGCCAACAATGTGACAGACCTGCGGGTTACAGGTATGCTAAAGGATGTGGAGGATGAGTTACAGAGGAAAGTTAAGAGCACACGCAGTCGCCAGGGTGAGCAGCGGGACCCGGAGGTGGAGTTGGAGCATCAGCAGTGTTTGGCACTTTTCAGTCGGATCAAGTTCACACGCCTTCTACTGACAGCGCTGATCGCCTTCACGAAAAAAGAGACCAGCTCAGTGAGTGAAGCTCAGAAACTCATGCAGCAGGCGGCAGATCTCCTCCCAGCCCTCCGCTCCAGCATCGAACATGGCATTCAGTCCCAGAACGATACTACTAaaggagATCACCCGATCATGATGGGGTTTGAACCACTTGTGAACCAGAGACTGCTGCCCCCCACCTTCCCCCGCTACGCCAAGATCATCAAAAGGGAGGAGATGATCAACTACTTCAGCAAGCTCATCGACCGCATTAAGACCGTGTGCGAGGTCATCAACACAACTAACCTTCATGGAATTCTGGACTTTTTCTGTGAGTTCAGTGAGCAGTCCCCCTGCGTCCTCTCCAGGTCTCTGCTGCAGACAACGTTCCTGATCGATAATAAAAAAGTGTTTGGGACCCTACCAATGCAGGACATGATCAAAGATGCTCTGAGGTACTTTGTCAGCCCACCAGTGCTCTCCTCCAAGTGCTGCCTGTATAATAACCACCAGGCCAAGGACTACATTGATTCCTTTGTCGCACACTGCTCGAGACCCTTTTGCAGTCTCATCCAGATTCACGGACACAACCGCGCTCGGCAGAGAGACAAACTAGGCCACATCCTGGAGGAGTTTGCCACACTGCAGGATGAGGCAGAGAAGGTGGACGCAGCGCTGCACAGCCTGCTGATGAAGCTGGAGCCCCAGAGACAGCACCTGGCCTGCCTGGGCACCTGGATCCTCTACCACAACCTGCGCATCATGATCCAGTACCTGCTCAGCGGCTTCGAGCTGGAACTCTACAGCATGCACGagtactactacatctactgGTATCTGTCAGAGTTCCTGTATGCATGGCTCATGTCCACTCTGAGTCGGGCGGACAGCTCTCAGTTGGCTGAGGAGCGCCTCCTGGAGGAGCAGCAGAAAGGACGCAGCAGCAAGAagaccaagaagaagaagaagggtcAAGGAGCTCGCCCCCTCAGCAGAGAAATCACCATGAGCCAAGCCTACCAAAACATGTGTGCTGGCATGTACAAGACTATGATAGCCCTGGATATGGACGGAAAGGTGCGGAAGCCGCAGTTTGAGTTGGACAGCGAGCAGGTGCGATACGAGCATCGCTTTGCCCCCTTCAACAGTGTGGTCACTCCCCCGCCAGTCCATTACGTCCAGTTCAAGGAGATGTCTGATCTGAAGAAGTACAGTCCTCCTCCTCAGTCAGCTGACCTCTACATGGCAGCCAGTAAACACTTCCAGCAGGCCAAACTGATCCTGGAGAACGTCCCCAGCCCTGACCCAGAGGTGAATCGCATCCTAAAAGTGGCCAAACCCAACATTGTGGTCATGAAACTACTTGCCGGCGGGCACAAGAAGGAGACAAAGGTACTACCGGAGTTTGATTTCTCCACTCACAAGTACTTCCCTGTGGTCAAGATCATCTGAATCAGAGCCCTGCATTATGACAACTCGTACCCACCTCCCTGACCCGGTCTACGTACACCAACTTTTTCCATCTGCGTAACTGTGGTCGGTCGCTATGAtaggacagagggagacagtgtcTGAAGTTGGTTGACCAGGACAAGATCATCCTTTACCCAATTGTCTTTTTGGTCCTGACCCACAAAGGACTACAAATACCAGACATCCCAAAGGACAGAAGAACTACATCCTTCACAATACCAAAAACAAACTTGTCTGACTATGGTATTAAAATGATTTATTTTTGTCATCCTTCTGTGCTACATTTcctcaataaaaaaaacagattatTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU546916 lncRNA upstream 36118 18393939 ~ 18396397 (+) False G481261
TU546919 lncRNA upstream 36118 18395637 ~ 18396397 (+) True G481261
TU546906 lncRNA upstream 40566 18375933 ~ 18391949 (+) True G481251
TU546902 lncRNA upstream 59367 18372697 ~ 18373148 (+) True G481247
TU546901 lncRNA upstream 59500 18372697 ~ 18373015 (+) False G481247
TU546999 lncRNA downstream 85632 18530398 ~ 18534351 (+) True LOC110525385
TU547625 lncRNA downstream 279497 18724263 ~ 18725818 (+) True G481879
TU547678 lncRNA downstream 293546 18738312 ~ 18739090 (+) True G481929
TU547752 lncRNA downstream 412313 18857079 ~ 18857493 (+) True G481999
TU547758 lncRNA downstream 419328 18864094 ~ 18864391 (+) True G482005
XM_036979509.1 mRNA upstream 66196 18363308 ~ 18366319 (+) False LOC118964849
XM_036979510.1 mRNA upstream 66196 18363308 ~ 18366319 (+) False LOC118964849
XM_036979511.1 mRNA upstream 66196 18363308 ~ 18366319 (+) True LOC118964849
XM_021605434.2 mRNA upstream 69562 18305112 ~ 18362953 (+) False ntrk2a
XM_021605448.2 mRNA downstream 45311 18490077 ~ 18504711 (+) True LOC110525384
XM_021605449.2 mRNA downstream 67559 18512325 ~ 18532048 (+) False LOC110525385
XM_021605452.2 mRNA downstream 248221 18692987 ~ 18706601 (+) True rfk
XM_021605462.2 mRNA downstream 380835 18825601 ~ 18834885 (+) True LOC110525393
XM_021605463.2 mRNA downstream 419751 18864517 ~ 18883144 (+) True LOC110525394
TU546804 other upstream 91949 18335332 ~ 18340566 (+) True G481159
TU546853 other upstream 142048 18290233 ~ 18290467 (+) True G481205
TU546849 other upstream 147203 18284797 ~ 18285312 (+) True G481201
TU546627 other upstream 454116 17914760 ~ 17978399 (+) False LOC110525363
TU545556 other upstream 714314 17717870 ~ 17718201 (+) True G480062
TU547753 other downstream 412861 18857627 ~ 18858156 (+) True G482000
TU548369 other downstream 814383 19259149 ~ 19259608 (+) True G482551
TU549525 other downstream 2089743 20534509 ~ 20537098 (+) True LOC110525429
TU549560 other downstream 2156052 20600818 ~ 20603002 (+) False LOC110525431
TU549559 other downstream 2156559 20601325 ~ 20603002 (+) True LOC110525431

Expression Profile