RNA id: XM_036979535.1


Basic Information

Item Value
RNA id XM_036979535.1
length 3016
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110525396
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 18895916 ~ 18919592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTAAACAGAGACGCATAAATAGGACACAACGTGAGGAAGACTAAGCCAACCGTGAGTGAGACAACATTTGGTCACAATTTCAAAATTCAAACAGAATCAACAAATTCGAACTCGAAAAGGGGGCTGGGTACGTTTTCTGAACCCGTCCAAAACGAGTTGCATAACTTCAGAAAACAACGCCAGTTTGTGGGCAAGGCAAGCCCACTCGATGCTAATCAACCAAGGGGCACACACACCCCTCTATCGTCAACGCCCCCTCCACAATCTCCCTCCCCGATAGGTCCAGGCAGagatgaaaaaaacaacaacaagggCTTTAAAAACATCCACATTGTTCCGTCCATCAGTAACATCTGGTTATCAAACCGGGGTTTCTcggcacattttttatttttaaagtttATAGTTCTTTCTTGCGTGAACTCAAAACGCGAATATGCCCAGCAAGAGGAAGAAGAACAAGCGCCGCATGAGAAGGGTGCAGGCCCAGAGGAGAGTCCTTGAGGAGCAGCATTCTACTGGCGCAGGCAAAGGAACCCCAGGAGTGGCTGCCGTGGCACCCCCCCTTGAAATATTAAATTGTCCCccccttctctcaccccctccagTAGTAAAGGTCCCAGTCGTAAAGCCCCCTGAAATATCCAATTGTCACCCCCTTATTCACCCCACTATAGTAGTAAAGGTCCCATTCGTACAGCCACCGGCCCCAGTCAAAGTACCAGAGCCTGAGGCTGTGGTGGCGGTGGTAGAGCCTGAAGTGGTAGCAGCTGAGGTTGAAGTTGAGACCCCAGTCGAAGCTCCAGTGGAGGTTGAAGTCGAGGCCCCAGAAGAAGTTCCAGAAGAAGTCCCAGTCAAGGCCCCAGGGGAGGCCCCAGAAGAAGTCCCAGTCGAGGCCCCAGAAGAAGTCCCAGTCGAGGCCCCAGAAGAAGTCCCAGTCGAGGCCCCAGAAGAAGTCCCAGTCGAGGCCCCAGAAGAAGTCCCAGTCGAGGCCCCAGAAGAAGTCCCAGTCGAGGCCCCAGAAGAAGTCCCAGTCGAGGCCCCAGAAGAAGTCCCAGTCGAGACTCCAGAAGAAGTCCCAGTCGAGGCTCCAGAAGAAGTCCCAGTCGAGGCCCCAGTCGTAGAAGCAGAAGCTCCTGTTGAGCCCCCTACAGAAGAAACTGCAGCAGGGCAGGAATTTGAAGAAAGCATAATTCCAGAGACTGAGCCAGTAACTGAGGCCATACCCATTCCTGAGGCCCCTGTGTCAGCTTTTGCTGAATTTAAGGTTCAGGTCGCAAACTCCGTAGCCATTACCACAGATATCGCACAGACTCATGATGAGCCGTGGATCGAGGCTGAAGTGGAGGCTGAAGTGGAGGCTGAAATAGTTGACGAGGTCCAAGCGAAAGTAGAGGCAGTAGTTGAGGAAGAACCAGAGCCCGATCCCATGGTCAAGGCCGAAGCTGCCCCAGTTGTAGAAGCTGAACTTGAACTGTCGGGAATCAAAGACGGAGACAGTCCTATCGTCAAAGCTGAAGCCATTCCTGAAGATATTGATGTAGAAGAGCATGAGACTGTTATGACAGAGGCACCTGAAGAGGTTCCAGTGGAGACAGAAATGATCCCAGAAAAGCTATGGAAGCCCGTGGAAGCACCGATTGAAGAAGCTCCTGTAGCCGAGGTCGCTCCAGCAGAGCTCCTCGTAGAGGCCTCAGTAGACCCTGTCATCAACACAATGGCTGACTTTGCCATCACAGAATCTGTTCCCGTTGTGGAAGCAGCCATGGCTGAGCAGGTGCCCGCAGTCTCAACGGATTCACTTGACGCCCTATCGGAGTTGCTGAACGACATCACTCTAGTCACTGAGCCCGCCCCTGTCACAGCTGATAAAGTAATTGACGAGCCAGAGTGTGAGGAGAAAGACATGACAGAGATGAGGGCTAAAGAGGAAATTGGAGCCCAGATGGAAATCGAGGCTAAAAAGGATGCCATAGATGAGAAGACGGTCCTTGATGTCATCTCTGGAGATTTATCCGCCCCCCACCCTGTTATCTCAGAACTGCAGTGTCACACGCAGCTCGTCGCCCCCAAGGATACCCCAACAGAGGCAGTGCTGAATGGACAGATGGCAGCTGAGGTGGCCATTGAGGGATAGATCTCTATGGATGTCCTCAGTCAGTATGAAGGACTAAAGAGAGCCTGACAGTGAGCCGACCAGCGAACTTTACTTTTCATTTTTTAGGGCTTAAAGGGACCGCTGGGAAATTTGACAGATATCCAACACTCAGTGCCTTTCTTGCTTGGGTtcttacaaaaaaaatattaaacaaGTTTAAAATGCGATATGAAGGTGGGGGAAtaatacttttttgttgttgagcagAATGTGACAATTTGGAATAAACAAATGATGGCTTTCATAGATTTCTGTATCCCATTGCATATATTGTGGATTTGCCTCAATTGTAAATGGCATGCATTGTGTATGAATACTGTAGAATTAATGAATGTGGCAATGGCTTGTCTTCACATGTTTGTATGGATGAGAGGGATTAATTCCTTGTACTCGTTTCCTGTTTTAACCTGGTTTGATTCCTTTTTGTGAAGGGACAGTATGGCAGTTTGTACAGTACCATAGCTACCCCCTCTTCTCCCTATCCCCATTGTGGTACTTTTGTTTTTTCAGGGACTGTATGATGACAGCTCCACCCTCTTTActgtgtagtgtcagtgtgtcTACAGTCCCAAGTCTGTCCTGGGCAATGTGAAATGGTGTGTAGTTTTAGGTCCTCTGACCAGATGCTCTTAACATTTAATTACCTATGCTGCCAACTTAAAATAGAGTACGGGGGCCTGTAGATCCTGTTTctagtttttcttttctttttctgtTTTGTATAGACCATATGATGTGGTACAACCGCTGTTTGTGTTCAGTTACGTGCTCTGGAAGAGACCATGGAGTTGTCATGTAATTGAGGAGCTGGGTTGGATTTCATTCCCCTTTTTGAATAAAGATGTTACTCACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU547758 lncRNA upstream 31525 18864094 ~ 18864391 (+) True G482005
TU547752 lncRNA upstream 38423 18857079 ~ 18857493 (+) True G481999
TU547678 lncRNA upstream 156826 18738312 ~ 18739090 (+) True G481929
TU547625 lncRNA upstream 170098 18724263 ~ 18725818 (+) True G481879
TU546999 lncRNA upstream 361565 18530398 ~ 18534351 (+) True LOC110525385
TU547824 lncRNA downstream 33055 18952647 ~ 18952969 (+) True G482064
TU547780 lncRNA downstream 45010 18964602 ~ 18964933 (+) True G482024
TU547775 lncRNA downstream 51281 18970873 ~ 18971950 (+) True G482019
TU547841 lncRNA downstream 98465 19018057 ~ 19018353 (+) True G482081
TU547851 lncRNA downstream 120156 19039748 ~ 19041156 (+) True G482091
XM_021605463.2 mRNA upstream 12772 18864517 ~ 18883144 (+) True LOC110525394
XM_021605462.2 mRNA upstream 61031 18825601 ~ 18834885 (+) True LOC110525393
XM_021605452.2 mRNA upstream 189315 18692987 ~ 18706601 (+) True rfk
XM_021605449.2 mRNA upstream 363868 18512325 ~ 18532048 (+) False LOC110525385
XM_021605448.2 mRNA upstream 391205 18490077 ~ 18504711 (+) True LOC110525384
XM_021605465.2 mRNA downstream 5557 18925149 ~ 18942573 (+) False LOC110525398
XM_021605466.2 mRNA downstream 6693 18926285 ~ 18942573 (+) True LOC110525398
XM_021605467.2 mRNA downstream 37802 18957394 ~ 18963887 (+) True LOC110525399
XR_005052031.1 mRNA downstream 52760 18972352 ~ 18974293 (+) True LOC118964850
XM_021605469.2 mRNA downstream 56176 18975768 ~ 19022920 (+) False LOC110525400
TU547753 other upstream 37760 18857627 ~ 18858156 (+) True G482000
TU546804 other upstream 555350 18335332 ~ 18340566 (+) True G481159
TU546853 other upstream 605449 18290233 ~ 18290467 (+) True G481205
TU546849 other upstream 610604 18284797 ~ 18285312 (+) True G481201
TU546627 other upstream 917517 17914760 ~ 17978399 (+) False LOC110525363
TU548369 other downstream 339557 19259149 ~ 19259608 (+) True G482551
TU549525 other downstream 1614917 20534509 ~ 20537098 (+) True LOC110525429
TU549560 other downstream 1681226 20600818 ~ 20603002 (+) False LOC110525431
TU549559 other downstream 1681733 20601325 ~ 20603002 (+) True LOC110525431
TU549652 other downstream 1883184 20802776 ~ 20803806 (+) True G483669

Expression Profile