RNA id: XM_036979541.1


Basic Information

Item Value
RNA id XM_036979541.1
length 7065
RNA type mRNA
GC content 0.54
exon number 39
gene id LOC110525400
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 18975768 ~ 19022920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGGGCCAATGTTGAGCAAGAGCCTTTCAGGAAATACATGACTGAGGCTCTGACGAATGTGGAGTAACATGACGACATGGGCTACAGTCCAATGACATTGGTCTCGGTTTTCTCTCAGTCTCCAGAAATGAACAGACTGTTATGTTTGATTTGTTCTTATAGTCGGATACGGCATTAGGTAGCTTCTGTTAGCCTGATAGCACAGCATTGATGTCTCTCACAAATTCTTCTCAAAAGTCACGGAGATCTTGGATTGAAGATACCTTCTGCAAGAGAGCATGTGGTAAATTCATCCCAGCATGTCGAGACCTACACAGAtgttttccaatgtgtcaagtatgCCAAAACCTAATAAGATGCTGCTGTGGACGTCTGGTAGGGGAGCACACCTTGCTGGAGACTGGCCCTTCCATGTCCAGCTGGCCTGGGCCTGGGACAGGGCAACAAGAGGAGTGGTCAGTGGAGTGCCACACACAAACCAGTGCCACCGATGCCTACGGAACCATTGACTTCCAGGACAGTGCTGGACGTAACTGCCATGCCAAGTATGTTCGTGTTGCGGTCGATGCCAAGGCTGAGGCTCTGCTGCAGCTGATGCGGAGTGAATGGCAGATGGAACGGCCTAAACTACTGCTGACGGTTCATGGGGGGACAGAGaacttccccctccctctcaagGTTAGACAGGCCTTCAGCAAAGGCCTGATCACAGCAGCCCAGAGCACTGGAGCCTGGATACTCACAGACGGCATCAACACAGGTGTGTCCCGGTACGTAGGGGAGGCTGTGAAAACATATGGCACCCATGACCTCAGGAAGAGGAACGCTGTAGGGGTTACGCCTTGGGGTGTAATTGACAATCACAGTGACCTTATAGGGAGAGATGTGCTCAGGCCCTACCAGCCTCTGGGAAACCCCTTGAGTAAGAGGGTGTGTCTGAACGGCCTGCACTCCCACTTCCTGTTAGTGGACGATGGAACTCTGGGAAAACATGGCTGCCAGCTGGGACTGAGGAGGAAGCTGGAGAGGCACATTCAACTGCAGAAGATCCACcctcGGTTTAACCAGGGTGTgccagtggtgtgtgtggtggtggagggcgGCCCTGACATTGTGTCCATGGTGCTGGAGTACTTGAGCAGTGTGCCCCCCGTGCCTGTGTTTGTCTTCGAGGGATCAGGTCGGGCAGCTGACCTGCTGGCATTCTTACACAAACAGACTGCTATTGACAGACAGCTGGACACAGACATCCAGGAGGACTTCCTGCTGAGGATAGGGGGCATGTTTGGTCTGGAGAGAGCAGACGCCAGCCAGCTCTACAACCTTCTGATGGAGTGTATGGACTACAGACAGTCTATCACAATCTTCGACTCGGAATCTGAGGATCAACAGGAGGCAGACTGTGCCATTTTGACGGCCACACTGAAAGGCACCAAGGCGTCTCCTGGGGAACAGCTCAGTACAGCTCTGGCATGGGACCGAGCAGACATAGCTAAAAAACACATCCTTGTGTATGGCCAGCACTGGCAGGTAGGCTCGTTGGAGCAGGCCATGCTGGATGCTCTGGTTATGGACCGGGTCGGCTTTGTCAAACTGCTGATCGACAACGGTATGACCATGAACCGCTTTCTGACCGTGTCACGCCTGGAAGAACTCTATAACACGCAGCAGGGACCAACAGACAATTTTCTCCATCTTCTCGTGGAAGATGTGAAACAGaCCCATATACCTAAAGGATACAGAGTCTCCCTCATAGATGTGGGGCAGGTAATCGAGTATCTGATAGGAGGAGCCTATCGGAGCACATACACACGGAAACACTTCCGGGCACACTATAACCTCCTATATGCCCATTGCAAGGAGACTGGACGGGATAGTTCAGGACCCCTTAACAAAAAGAGGAGGGCAGACTGCACCCTGCGCCCGCACCAAAGCCCAAACAGTAGTCCTTCAAGGCCACCCTTCTTCCGCACTGCTCAGCCCTATAAACGCAAGGAAAGATCCATGGTGCTCAGGGACCTGAAGGTGGCCCAGCAGCAGAGCTCCGAGCTGGGTGACTCTCCACTGTTTGTTTACAACTTCAATGACCTGTTTGTGTGGGCTGTGCTGCAGAGGCGGCAGCAGATGGCGCTGTTCCTGTGGCAGCACGGGGAGGAGGCCATGGCCCGGGCTACAGTGGCCTGTAAACTGTACCGTGCCATGGCCTACGAGTTTCGGCAGAGTAACATGGATGACACCACAGGGGAGCAGCTCAAAACCTACTCTATggactTTGGTCAGCTGGCGgtggacgtgctggaccgtgcctTCAGACAGAACGAGCGCATGGCCATGAAACTGCTGACTTCGGAGATGGAGGCCTGGAGCCACTTCACCTGTCTGCAGATGGCTGTGTCCTCCCGGCTCCGCCCCTTCGTCTCCCACTCCTGCACCCAGATGCTGCTCACCGACCTGTGGACCGGCCGCCTCAACATGAGGAAGAACTCCTGGTTTAAGATCATCCTGAGCATCCTCATGCCCCCTGCCATCCTGCTATTGGAGTTTAAGAGCCAGGCAGAGATGTCCCATGTCCCCCAGTCCCAGGAGGCTTTGCAGTTTGGTTGGGACACGGGAAGACCAGAGGCAGCCCAGGAGGGGGGGCATACGGATGGCCAGGATGCGGAGAAGGGATCAGCGTGGTGGGAGAGTTGCTCAGCCCCCGAAGCTGACACAATCACACCTGTTACCACCCAGTGTTTCTTCTGGACCACGAGGCTGTACGATTTCTACACCGCTCCTGTCGTCAAGTTCTGGTTCCACACGATGTCCTACCTGGCCTTTCTCATGCTGTTCTCCTACACTGTTCTGGTAAAGATGGAGGACCGGCCCAGCACTCAGGAGTGGCTGGTCATTGCGTATATTATATCCACTGCTGTGGAGAAAACAAGAGAGGTGTTCATGTCAGTGCCGAGGAAACCCAGTCAAAAGCTGAAGGTGTGGTTTGGAGAGTACTGGAATGTGACTGACTTCCTGGCCATCGTCCTCTTCCTGGTGGGGCTGGGGCTACGCTGGGACAGCGGGTCCTACCGGACTGCCGGGCGGATCACCTACTGCCTGGACATCATCTTCTGGTATGTTCGGGTGCTGGACCTGCTGGCCGTCAACCAGCATGCCGGGGCCTACCTCACCATGATCACCAAGATGACTAGTAACATGTTCTACATTGTGGTGATGATGGCGATTGTGCTGCTGAGTTTCGGCGTGTCCAGGAAGGCCATCTTGTCTCCAGACGAAGCTCTGTCATGGAGCCTGCTCAGAGATGTAGTCAACCAGCCGTACTGGATGATGTTTGGAGAAGTGTACGCAGGCGAAATAGACACCTGTGCAGGTGACACGCCGTGTGTCCCCGGTGCCTTCCTCACCCCCTTCCTCCAGGCCGTCTACCTCTTCTTCCAGTACATCATCATGGTCAACATCCTCATTGCCTTCTTCAACAATGTCTACTTTGACATGAGGTCCATATCCAATAAGCTGTGGAAGTACAACCGCTACCGTTACATCATGACCTATCAGGAGAAGCCGTGGCTGCCCCCGCCCCTCATCATCCTGAGTCACATGACCCTGTGTGTGACTGCCATTTACCAGAAACACAGAGGCTTGTCCGAGCAGGAGACGGACTCCTGTGGgcttaagCTTTACCTGGGCCAAGAGGAGCTGAAGAGGCTGCATGAGTTTGAGGAGAGGTGTTTGGTGTCGTATTTCCACGAGAAAAACCAAGATGTTCTCTGCAGCCAGATAAACAGGGTACGAGCCACTGCAGAAAGGGCTGAGGAGATGGGTGTGGTTATGGGCGAGGTGTCGGACAGGGTCCACTTCATCCAGGATACCCTGCAGGTGTTGGACAGCCAGCTGGGTCAGCTGCAGGACCTGTCCGCCCTGGCCGTGGACACTCTCACCCTCCTATCGGCCTCCGATAGCCTGCAGCAGGAGGAGGCCCGCCTAGGCCACTGTCGGCCAATCACCACCTCCCGTCACCATGTTCCCCACAGCTGGACCCTCCCCCACGGAGGTGGAGGCAGTGTTGACATCATGCCCTGCCACACCCCTAGGGCCTACCGCAGCACACCACCCTCCCTGCTGTGGGGCCACACCTCCTCCCGCAGCCAACGCCCGTCACTGGAGTGGCACACTGGGGCCTGGGGGGGCGGCGACCATGGAGGGCAGGGGGCTGGTGAGTCGTGTGTGCCTTCCCGCTGTGGCTCTCCTCCGTACCCTTCGGCCTTGGCTATAGACAGTTCTCTGGAACCCCCGCACGGCAAACCCAGGGTCTGCTGTGACCCTGAGATGTCCATGGAAAAGGAAGGGGAGGAGTTTGGGAAGTCCTTTGATGTGAATGTGTCCAGGGCCTCTAGTCATGCCTTCCTGTTGTCGGACACCCAGGATGAGAGAGGCTGTGGGGCCAGGGGTTTGGTGAACCCCGCCTTCTGTAAGGACGACGACCCTGGGGCAGTTCACTCCAGACGGGGCCAGTGGGGCAGGAAGCGTCCTCACCGGTGGGCGGGTCTGTCCAGGGACCGGCCCTACAGTCACAgccgctctctctcctctagcatGGAGAACATGGCTCTCTCTGGTGTCCCCCTGAGCCAGCTACGAGCCTCCTTCCCCGCTCTCGATTGCCTGTCGGAGGGGGGAAGATTCACAGCTGACATACCCCTTGGCTGCAGTAAAAGCAGAGAGTGGTCCAACTGGTTTGATCTGGCAGTGAcctcagggagcagagagaggtgtCAGGGCAGGAAGACAGTCAAGATCCTGGAGGAGAGTTCTTCAGACGCTGGGAAAGAGGTGGACTCATACCTCTCCGACGTGTGCAGAAAGAGGAGGCGCAGGGGAGGAGAGCCTGTGTGCTGGTCTGCCTCTGCCAGCCCCAACCCTCTCAATTCTGAACCCATGGATTCGTTGCAGAAAGTAGCTTTTTCACGTCAGCAGGACTCCAGTCAGTCCGTGTGGACCAGCAGGGCCTGCTCTGTCAGCTGCAGATCCTCAGTGCGAAGTGGGATCGCACGTGAAGAAGACCTGGACCCACACTACACAGCCATGGAAAGGAACAACCTGATGAGGCTTGCTCACACCATACCTTTCACACCTGTCTCCATAATGGCGGGAGAGGAGGTGAGTGTCTACACCCTGGAGGAGGTTGAAGCTGCAGGCCCGGAGTCCTCCATACCCTACTGGTCATCCAAGGGGCTGTCTGCTGTGCTGCAGCCGCTGTCCAGCGAGGGCTGTCTAGATGGGGGGCTGCGCAGGGCCATGCTCGTACTTTGCACCTGGGCCGAGAGGGATGTCCTGAGGGTGGGCTGCGTGTATTTGGTCAAAGCCATCCAGCCCGATGTGGTCTGCACCTGGCAGAGGGTCTTCCACAGCGACACCACCCTCCAACTCTGTCTGCGGGAGATACAGCAACAGAGAGCTGCTCAGAAACTCATGCATGTGTTCAACCAAGTAAAACCAGAAAACATGCCTCATTCTCCAAGGTTCCTGGACATGTCTCTTCTTCACTGGCACTCTGACGGCCAGTGGTTGACCATCGAGAGGAACATGACGGGAGATTTCAGGAAGTACAATAATAACACAGGAGAGGAGATCGCCCCCTGCTGTGGGATGGAGGAAACGCTCCTGGCCTTCTCCCACTGGACCTACCAATATTCCTGCAGGGAACTGCTGGTGTTGGACTtacaggGAGTGGGATTGGAGCTTACAGACCCATCGGTCATCCGAGCAGAAGACACAAGCTCGAGTGATGACATGGTGTTTGGTCCTTCTAACCTGGGAGACGCTGCCATCCACAGCTTTGTCATCAAGCACACCTGCAACTCCTGCTGCGAGAACCTCGGACTCTCAGATTTGAGGAGGAGCACAGACATCCACGGGAAAACAGAACACAGGCCTTTTGAAAAGGAGAGTGGATTGATCATGACTAGGATGTAACCTCTGATCCGGAAGCAGAAGTACGCCATCCTAACCTCTGATCCCAAAGCAGAAGTACGCCATCCTAACCTCTGATCCGGAAGCAGAAGTACGCCATCCTAACCTCTGATCCCGAAGCAGAAGTACGCCATCCTAACCTCTGATCCCGAAGCAGAAGTACGCCATCCTAACCTCTGATCCCGAAGCAGAAGTACGCCATCCTAACCTCTGATCCCGAAGCAGAAGTACGCCATCCTAACCTCTGATCCGGAAGCAGAAGTACGCCATCCTAACCTCTGATCCGGAAGCAGAAGTACGCCATCCTAACCTCTGATCCGGAAGCAGAAGTACGCCATCCTAACCTCTGATCCGGAAGCAGAAGTACGCCATCCTAACCTCTGATCCGGAAGCAGAAGTACGCCATCCTAACCTCTGGTTCAGGTGGGATGAAGTTGCCCTTAAAGCATAGACACTGATTTAATGTCACTTTTGTGTTTTCCTCCCcaaatggttatggttaggatctGGAGAAGCTAAGCGGATCCAGAGGTGTACAAGGGTAACTTCTACCAGGAAGGAAAGCACTCACTTGGTTGGTTTGAATGGATAGTGTACATTGTGTAGCTTTATGTGGACTAAATCTTGTGTTGGATGTCTGGTAGGGCTTTTGTTGTAACAGCAGTTTACATTGCAGAAGTCTCAGCAGCAAGCCAGATGCTGTAGTCTTGCATTCATTCCGCCTATGGAGTGCATAGTGGAGGGAGGCCGCAGTGTCTGTTGTGCCACAGGTAACCTATTAATCAATCAAACACTTTGCCTTATTGTAATGTTATGTATCATTAGACATGATGCAGAGGGCATCCTAGGAAGGTGTTTCCATACACCAAGATATTTTgtttgttctctgttctgtttaaATGAACTCCTGGTTAATTTTGAAATGAGCACCACTTTTATGATCTTTTCAGCTATtatggcagccattttgaatGTTCACAATAACTCACCTTCCTTGTTAAGTTTCAAACGGGCAGACCTTCTGGGATGTTTTCAGATCCCCTGAGGAATTGTTGTACCAAATGTCATGCTTATATCTGCTTCAAaatgtttcgttt

Function

GO: NA

KEGG:

id description
K04981 TRPM6, CHAK2; transient receptor potential cation channel subfamily M member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU547775 lncRNA upstream 8014 18970873 ~ 18971950 (+) True G482019
TU547780 lncRNA upstream 15031 18964602 ~ 18964933 (+) True G482024
TU547824 lncRNA upstream 26995 18952647 ~ 18952969 (+) True G482064
TU547758 lncRNA upstream 115573 18864094 ~ 18864391 (+) True G482005
TU547752 lncRNA upstream 122471 18857079 ~ 18857493 (+) True G481999
TU547851 lncRNA downstream 16828 19039748 ~ 19041156 (+) True G482091
TU547852 lncRNA downstream 17633 19040553 ~ 19040786 (+) True G482092
TU547871 lncRNA downstream 42228 19065148 ~ 19108786 (+) True G482111
TU548300 lncRNA downstream 177956 19200876 ~ 19201162 (+) True G482491
TU548304 lncRNA downstream 180872 19203792 ~ 19204604 (+) True G482494
XR_005052031.1 mRNA upstream 5671 18972352 ~ 18974293 (+) True LOC118964850
XM_021605467.2 mRNA upstream 16077 18957394 ~ 18963887 (+) True LOC110525399
XM_021605465.2 mRNA upstream 37391 18925149 ~ 18942573 (+) False LOC110525398
XM_021605466.2 mRNA upstream 37391 18926285 ~ 18942573 (+) True LOC110525398
XM_036979538.1 mRNA upstream 60372 18895916 ~ 18919592 (+) True LOC110525396
XM_021605474.2 mRNA downstream 272318 19295238 ~ 19304130 (+) False LOC110525403
XM_021605472.2 mRNA downstream 272358 19295278 ~ 19304130 (+) True LOC110525403
LOC110525111 mRNA downstream 324888 19347808 ~ 19349023 (+) True LOC110525111
XM_021605478.2 mRNA downstream 437111 19460031 ~ 19469464 (+) True LOC110525406
XM_021605483.2 mRNA downstream 480721 19503641 ~ 19521595 (+) False LOC110525411
TU547753 other upstream 121808 18857627 ~ 18858156 (+) True G482000
TU546804 other upstream 639398 18335332 ~ 18340566 (+) True G481159
TU546853 other upstream 689497 18290233 ~ 18290467 (+) True G481205
TU546849 other upstream 694652 18284797 ~ 18285312 (+) True G481201
TU546627 other upstream 1001565 17914760 ~ 17978399 (+) False LOC110525363
TU548369 other downstream 236229 19259149 ~ 19259608 (+) True G482551
TU549525 other downstream 1511589 20534509 ~ 20537098 (+) True LOC110525429
TU549560 other downstream 1577898 20600818 ~ 20603002 (+) False LOC110525431
TU549559 other downstream 1578405 20601325 ~ 20603002 (+) True LOC110525431
TU549652 other downstream 1779856 20802776 ~ 20803806 (+) True G483669

Expression Profile