RNA id: XM_021605541.2


Basic Information

Item Value
RNA id XM_021605541.2
length 1558
RNA type mRNA
GC content 0.48
exon number 5
gene id mrps30
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 20730811 ~ 20733970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCATCAGCGACAAACATGGCGGTGCGCACTCGCTTGCCCTTGCAGTCATTACTTCATAAAAAAGGACATGTGTTTAGAAACGACCGGATCGTTCATACAAAGACAGCAATTCAGGAGCCTGTATACCCTCCCATTGTACCTTCGCTGACCGCTAAAAGTAAGTCTGCAAAAAGACGTCAGATTGCAGAACATCTTGACAAAGTACGTGCCGCCGATGTGCAGGAAAAATTGACATTCCTCACACGAGTTCAGCGAAAGAAATATGTGTTGTGTCCGCAAACCTTTGCTCTTAATGCTGATAAATGGTATCAGCACTTCACAAAGACTGCATATCTACCTGGCTTACCTGAGAAGTTCATTGTTGAAGAGACCAAGGAGGAATCGGTACCTGACTTTCAGAATGCGTCATCCACCATTGACGAAACTGCATTTGCTGACATCCGTTCCCATGTCTGCCATTCAATTTTACAAGAGAACTGGTACATGAAGAAACGTCAACCGTTCTTGCAAAGGGAACAAGAACATTATGTGGCACCTTTTCTGAGAAACTTGGTATCTGGACTCACACACACTATGGCCAAACACAACCCTGTACTCCAGCTGTCAAGTTTAGATCTTGACCCTCAGGTTAACTTCTACTGGATGAGAGGGCAGAGGACCATTCCAAGGGGACATCGGGGTGGCCGCGTCGAGCCAATCAGATTCCAGATTGACGATAAGCCACACAGTCAGATAAGGATACCTCAACAACTTCCACAGTTTGTCCCCCTTGAGGTGGTGATGTCTGCTGAAGTCCCAGAGATAAAGTTTGCCCCAGACCTGCTTCCCATGTTCAGGAGACAGTATGAGAACAATATCTTCACAGGAGCCAAGCTTCATGATCCAGGCTGTTACGGCCACACCCAGTTCCACCTGGTCCCTGACAGGTACCGCAGGGACAAAATGGCCAAACGGAATCTGACTGACCAGATCGAGGTCTACCTGAGAGCCAATGGCATTGCCAGTCTATTTGCATGGACAGGAGCACAGGCCATGTATCAAGGTTTCTGGAGCCATGAGGACGTGACCAGGCCTTTTGTGTCCCAGGCTGTGATCACAGACGGCCAGTACTTCTCCTTCTTCTGCTACCAGCTCAACACCCTGGGCCTGTCCATGGAGACGGACGCTGGGAACCCCAGGAAGAACGTGTGCTGGGGGACAGACAGCATGCGTCTATATGAGGGGGTGAAGGATGGGGCTGTGGTGGGGCTGGACGACAGGGTGCTCAAGCTCCTTGTCCAGTTCCTACTGAACAGGTCAGGTTGACATGGAGAGTTTAGTGTTtgtgggaggaaggaaggaagtgttTTTGTTGAAGTGTTTCCATCTGTATTCAACATTGGCCAATATCAACTAAAGGACACAACTGAGCATGCATGCAGTACATCGCTGGTATAATCTGGCAGAATGTATTCATGTAGAATGgaataaaaacattgtttttaaatgGACACTGTTGCATACAGGTCAGTGGGTTGTTTTTCAGCTGTGTGTATGAAATTAAATGAATGCACAGTC

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K17409 MRPS30; small subunit ribosomal protein S30

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU549572 lncRNA upstream 24406 20620100 ~ 20706405 (+) True G483593
TU549613 lncRNA upstream 38452 20690848 ~ 20692359 (+) True G483631
TU549575 lncRNA upstream 94236 20635375 ~ 20636575 (+) False G483596
TU549576 lncRNA upstream 94517 20635375 ~ 20636294 (+) True G483596
TU549530 lncRNA upstream 160448 20532076 ~ 20570363 (+) True G483556
TU549675 lncRNA downstream 152937 20886907 ~ 20889734 (+) True G483690
TU549712 lncRNA downstream 189196 20923166 ~ 20924220 (+) False G483721
TU549713 lncRNA downstream 189196 20923166 ~ 20926045 (+) True G483721
TU549765 lncRNA downstream 266608 21000578 ~ 21000911 (+) True G483767
TU549786 lncRNA downstream 290696 21024666 ~ 21025451 (+) False G483778
XM_036979572.1 mRNA upstream 20160 20699915 ~ 20710651 (+) True LOC110525440
XM_036979573.1 mRNA upstream 20455 20699898 ~ 20710356 (+) False LOC110525440
XM_021605546.2 mRNA upstream 48462 20679145 ~ 20682349 (+) False gsdf
XM_021605547.2 mRNA upstream 48462 20679145 ~ 20682349 (+) True gsdf
XM_021605537.2 mRNA upstream 85703 20624600 ~ 20645108 (+) False scarb2a
XM_021605551.2 mRNA downstream 6456 20740426 ~ 20744978 (+) True LOC110525442
XM_021605557.2 mRNA downstream 21984 20755954 ~ 20779577 (+) False prlrb
XM_021605555.2 mRNA downstream 21985 20755955 ~ 20779577 (+) False prlrb
XM_036979579.1 mRNA downstream 21985 20755955 ~ 20779577 (+) False prlrb
XM_036979580.1 mRNA downstream 21985 20755955 ~ 20779577 (+) False prlrb
TU549560 other upstream 127809 20600818 ~ 20603002 (+) False LOC110525431
TU549559 other upstream 127809 20601325 ~ 20603002 (+) True LOC110525431
TU549525 other upstream 193713 20534509 ~ 20537098 (+) True LOC110525429
TU548369 other upstream 1471203 19259149 ~ 19259608 (+) True G482551
TU547753 other upstream 1872655 18857627 ~ 18858156 (+) True G482000
TU549652 other downstream 68806 20802776 ~ 20803806 (+) True G483669
TU549738 other downstream 224785 20958755 ~ 20963326 (+) True LOC110525116
TU550839 other downstream 730169 21464139 ~ 21466905 (+) True G484674
TU550899 other downstream 819762 21553732 ~ 21554097 (+) True G484726
TU552088 other downstream 1707346 22441316 ~ 22444619 (+) True G485780

Expression Profile