RNA id: XM_036979580.1


Basic Information

Item Value
RNA id XM_036979580.1
length 2332
RNA type mRNA
GC content 0.46
exon number 11
gene id prlrb
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 20755954 ~ 20779577 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTAATGAGGGCAGATACGCGTGTGATAAACgggccatagagatagatagaggattTATATTTGAATCTGCCATTATAGCGTCTGCTAGAGCATGGGTagcgccattgaggctatctcAATTTTAAAgtagtttatttttattcttcttcattggctgattgctcccaactAATAGGAATCCCAAActagttgactacttcaaaatggtggaagccctcaatagcaatgtccatgctaaaataTGTAAGTAGATATCCAGATATAAAGTAGGTTTTTTTTCAGTTGGCAAAATGCCACGTGCGTCCACTTATATCCGTGCATTCATAACAACCTCaccattacgaaacttctattcaATCAAATTTGGGGTGGAGCaaaacctcttcctctctgacttGACTGACTATACAGCACTTTAACCACGAGTCCAGTGGATTCGTGCTTTACCTAGGGCCCACCATCACTGCCTGTGAGGTTAGGGGCAAGATGTGGGGAGAAGTTGGAGGGGCGTTGGTGTTGTTGCTGCTTTCGGAAGTCTTGGACTGCATTGGTATCTCTCCCCCAGGGAAACCTGTGCTCATCAACTGTAGATCCCCTGAGAAGGAGACCTTTACATGCCGGTGGGACCCTGGTTTTGATGGAGGACTACCCACAACCCACCACCTCTATTACCAGAAAGAAGACTCCTATGGAATGTACGAGTGTCCAGATTACCAAGCTGCAGGGAGCAACTCGTGCTTCTTCAACAAGAGCCACACCTCTATATGGGTCAACTACAACATCACAGTGGTGGCCATCAACTCTCTGGGCAGCACTGTCTCTGACCCGCTGGAGGTCGATGTTATGTatattgTCCAGCCCAATGCCCCAGAGAATGTGACAGTGTCTGTGGTGGAGACTGAGGAGAGTCCACACCTCCTGGTGAAATGGGAGCCCCCTCACGAGGCCGACACACGCTCTGGCTGGATCACTCTCACCTACCAACTACGGGTGAAACGACAGAATAAGAAGGAGAGCGAGTGGGAGGAGTATGCCTCAGGGAAGCAGACCCAGTTGATCATCTACAGTCTGCATCCAGGAGAGGTCTACATGGTCCAGCTTCGCTGTAAACTAGACCATAGCCTCTGGAGCGAGTGGagcaccactacacacacagaggTCCCTGATTactTTCTGAAGGAGCGATCGATCTGGATTGTGGTCACCGTCTTTTCTGCTTTTATAATCCTGCTTGTTACCTTCACCCTGGCCATGAAGAGAAAATATGTGAAGCATTGTCTTCTGCCTCCTGTTCCTGGTCCAAAGATATCAGGACTAGATACACAACTCCTGAAGAGTGGGCGGTCCGAGGACATTTTAAGCTCTCTGATCAACCAGGGCTTTCCTCCCACCATAGCCACTAAGGACCAGCAGGTGGACTATCTGCTGGTGTTTGATAGTGAACAGGTGACACCAGATCTTCAGAATGGACAAACAAGGACAAATAACTCCATAGATCATGGTTGCTATGACCACAGCCTTTTGATGGAGGCTAATAATAAAGAAGTAAAAGTTGGAGGCAGAGAGACGGTGGAACAGGGTTATTCTGAGGGGCTTGAATCTACTTTTAGGAAGACCAAGGGCCTGTCCACTGACGTTACATCTCACCCATATCCTCAGAAGAAGCCATTCAACAATGTTACTGAAACGCCAAAGCAAGCGACTGTTTCCAGCAAGTATCGATCCTTAAGCCATCATAAAGATCTCTGGGACAGCTTAGCCAGACATCTAGACTACAGGGAAACAGTGGTCAAGAGCCAATCAAACTGTGATGACAAACATAATTTGTCATCACAGAATATTGTGACTCCCTCGAAGGACATTGGTTATGTGGAGGTTCATAGGTGGACGAAGAGCATAGGCCTAAAGGTGCTTGTACCTAAGATGGATAAGAGGCAGGACTATAGCAAAGTGAGTGTGGTGGAGAATGATAATGTAGTGCTTCTCAAGAGAGAAACGGTCCCCCTCAATTGCACTTCCTGTAAGGTAGGAGGCAATCAATCAGAGAAATGTCTCCAACAGAAGCCATGTAAACCTAATATGACAGTGCCTGCAAAAGAGGGAGTGCATATAGGATCTAATGGTTATGTGGAGCCTGTCACTATGTCACACACTTTATAAAATGTAATTGTCTGAAATGACATTCCAATGTCATTCAATGTCCAAGCAAGAAAATTAAATACTCGGGATTGTGACATTTTCACTGACAAGAGAATTGACTATCATGTTGCTCAGGATATTGtttttgtatgtactgtatacagtgAGCCAATAAATATGGTATTTTCTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU549572 lncRNA upstream 49550 20620100 ~ 20706405 (+) True G483593
TU549613 lncRNA upstream 63596 20690848 ~ 20692359 (+) True G483631
TU549575 lncRNA upstream 119380 20635375 ~ 20636575 (+) False G483596
TU549576 lncRNA upstream 119661 20635375 ~ 20636294 (+) True G483596
TU549530 lncRNA upstream 185592 20532076 ~ 20570363 (+) True G483556
TU549675 lncRNA downstream 107330 20886907 ~ 20889734 (+) True G483690
TU549712 lncRNA downstream 143589 20923166 ~ 20924220 (+) False G483721
TU549713 lncRNA downstream 143589 20923166 ~ 20926045 (+) True G483721
TU549765 lncRNA downstream 221001 21000578 ~ 21000911 (+) True G483767
TU549786 lncRNA downstream 245089 21024666 ~ 21025451 (+) False G483778
XM_021605551.2 mRNA upstream 10977 20740426 ~ 20744978 (+) True LOC110525442
XM_021605541.2 mRNA upstream 21985 20730811 ~ 20733970 (+) True mrps30
XM_036979572.1 mRNA upstream 45304 20699915 ~ 20710651 (+) True LOC110525440
XM_036979573.1 mRNA upstream 45599 20699898 ~ 20710356 (+) False LOC110525440
XM_021605547.2 mRNA upstream 73606 20679145 ~ 20682349 (+) True gsdf
XM_036980154.1 mRNA downstream 54423 20834000 ~ 20835428 (+) True LOC118964873
XM_021605565.2 mRNA downstream 70594 20850171 ~ 20866226 (+) False LOC110525447
XM_021605564.2 mRNA downstream 70594 20850171 ~ 20866839 (+) True LOC110525447
XM_036979585.1 mRNA downstream 160234 20939811 ~ 20946942 (+) False LOC110525115
XM_036979583.1 mRNA downstream 161245 20940822 ~ 20946942 (+) False LOC110525115
TU549560 other upstream 152953 20600818 ~ 20603002 (+) False LOC110525431
TU549559 other upstream 152953 20601325 ~ 20603002 (+) True LOC110525431
TU549525 other upstream 218857 20534509 ~ 20537098 (+) True LOC110525429
TU548369 other upstream 1496347 19259149 ~ 19259608 (+) True G482551
TU547753 other upstream 1897799 18857627 ~ 18858156 (+) True G482000
TU549652 other downstream 23199 20802776 ~ 20803806 (+) True G483669
TU549738 other downstream 179178 20958755 ~ 20963326 (+) True LOC110525116
TU550839 other downstream 684562 21464139 ~ 21466905 (+) True G484674
TU550899 other downstream 774155 21553732 ~ 21554097 (+) True G484726
TU552088 other downstream 1661739 22441316 ~ 22444619 (+) True G485780

Expression Profile