RNA id: XM_036979591.1


Basic Information

Item Value
RNA id XM_036979591.1
length 3133
RNA type mRNA
GC content 0.46
exon number 13
gene id cfap157
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21043032 ~ 21056547 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTCGAAAGTATTAACGTCAACGAAAGCGAATCTTAATCGAGCCTAACCTACATGGATAAAAATATAAACCATGGAAGTGAGACTGTCATTATGCATAATGTACTTTTGTAATATTAATGTTATACCAGTGCAGTGGTATATTTTTATATAACCAACTACCGCACCGATGTTAGCATAGCGTTTAATTAGCACCCATTTTCACTTGAGCTAGCTAAGTAGCAATAGCACCCTTTTGCATGTGAGCTAGCTAATTGCTTACAATGAGGGAATCTTATTTGGACAAATTTGCCTACTTGAGCAGTAAGCCTAGGTTTACATGTACAGTTATGTAATCGATTTGATTGTTGATTTTCTGTGTTTCAATGTATGCCATGTGTTTGGCTGGCTCTAAATATGTATCTTTGATGCTGACGGCCATTCCCTTAGTTACACCTAGTGAGTCTACACATAGTATATACAATAATGAAATCACCTGGTCCCAACATGCATGGCAAGTCAAGAAAAGTAATTGTAACTTGTCCACACTGCAAACTGAAGTTAAATAAGAAAAACTTCAAAACACATTTACGAAGAAAGCCTACACATAGCTTTGAAACAGTGTCCAATGAAATATTTTTGGCATGTGAGTGCATTGATGTGAGAAATGGTGTGTTTGCAGTCAAAAATAAATGTTCTGGTCCAGCAACACCCATAAATGTTGTTTAAAATAGTTTGGCTAATTCAGTTCCAACTGTGTTGAAAACTGTTATGCATGCTGGAGTATTAAAAAGCTGTTGAATTGTACTTTTTCTTTACTTTCACATACACTGTGTTGACAGAAACATTGCTCAGATCTTGTCCCCTGGACCCTGGAGGACTTCTGGTGTGGATGATGTTCAGGATCTACCAAAGCAAGGTTTCTCAAACAACTGTGGGGTGTTTGTTGTGATGGAAAATACGCAGCAAACTAGGCGATGGCGGTGCCTAGTTCTCCTGCAGAACTTTCCCATACAGTCTGAAGAAGAGAGGTTGAAAGATCGAAAAAGGTGGCAAAAACAAAGCACACTACAGGATGATGTTGAAGATGTCCCCCCCCAAGAAGTCACAGCATGTCACATCAGTATACAGCTCTGCAGGATCAGATATCAGCACAAATGTGATGAGTTGGAGGTGCAACAGAAGGACTTCTCCTCTCAGTATTTCACCGttgagaaggagaagaaagacaTTGTGCTCTACCTGAAGCGCTCGCTGGCCCAGAAGGAGGATGAGCTAACAGACTTGTTGGAGAGACTGGTGGGACTGCAGCAGGCCAAGGAAGCTGAGAAGGACTCCTTTGAGCTGCAGCTCAGTCAACTTCGCCAAGAGTTCCAGGAGAACAAGGACAAGCTCACCTCAGAGAACATGGTCCTTGCGGGTAAGCTAGCAGCTCTCGAGGAGTTCCGTGTACAAAAGGAGGAGCTGATGGCCCACTTGGAAGGCCTGGAGGAGCAGCTTGGGAAGCAGAGACAGGAGCACCACACAGTCATCTACAGCCTGGAGAGGAAGGCTGTGCTGGACAATGACAGACTAAAGAAGGAGATGCAGCAGCACGTGGCGGCGGTGGCAGCCGAGTTTCGGCGCGTGTCGGACAGGAAGATGCCAGAGACGACCATGAGGGCCATCCACGAGAATGTGTCTGTGACGGCCCAGCTTAGTCAGCTGTCAGACAAGAGCAAGCAGCTGCTGGAGGAGAACGAGGATCTGAGGGATAAAGAGAAGCATATTCGCAGAGAGATGGAGGTCCTGGAGCCCTTGTTCAACAAGATGACCCGTAAGAGCCTCAGCAACCAGAAGGTGATCCATCAGCTCACAGAGAAGTGTAAGCAGATGCAGGCTGAGTTGGAGGAGTATGCTAGGGCTCAAGAGGAGCATCAACAACTGCAGAAGGATCATGTTGTACTGCTGGCAGAGATGCATGCCCTAAGGCAGGTGCAGGCCTCTCTgttggaggagacagggaggaactGTGCCGAGGCAAACAGGCTGGGGAGAgcgctggaggaggagagggacgtGAGAGGACAACTGGAGACCATCCTACAGGCGGCTGCATTCGCCCTGAAACAGGCCCTCATGGAGGTGCCTAAAGAGGAGGACTCTGAGGTGAAGACTCTGGTGCGGAGGAACCAAATGATGCAGAAGCTGTTGGCTGTGTTGGACAGTGCTGCTCTGTTGGGGAAAGGGCCTGCCATGAAGGACTTCATCCCAGAGGGAGACTCCCTCCACGAGCTCAAGACCGGCCCTGGCCCAGGAAGATCATCAGGGCTTCTTGGTCCTCTTCTCAAGGACACCACCCAGCTGTCTCACTTCAAGACAGGAGACCTGGGCCTTGTACCGCGACGGAcacacaactacaacaacatcCTGTCCAAGATGGGACCCCTCTCCAAGAGCACCCGCCTTCAACTGCACAGTCTCACCACCCCAGAAGAGGACCAGCCCATCCAAACCCTCTGGTCCAGAGAGCCTGGCTCCTCCACTCAGGGACCCTCCCAGAGGGAGCCTGCTTTCCCCCCACAGGCCCTCTCCAACCAGGGGCAGCGCCGCTGAACCCATCCTCAGATAGGCAGGACTGGGACTGGGATTTAAACCCCTTTTAATGGGACATTTCAACAAAAAATAAATGTTGCTACATGGTTATGCTCACTTTTTGGAATGACATGACTAATTCTGTTTCTTTTCCAACCACTAGGTGGCAGGAGCAACTCTTAGAATATGTTGTACTGAAGCAGACAAAGACCAGACACAATAATTTTATCTCTAGAAATCTAATAAAGGCTCTGTTATTTTGTGTTATGATTTAGGTCAAATTTATTTGGAGACTAAAACCAAACAATAAACATTAGAAATGTATACTCAAAATAAGAAAGGTGATATTGTAACAAAGCCAATTGTCCATCTACTAAATCCAGTATGTAGTTCATGAAGTAATAAACAGAGGAAAATACTTTTAAAATGCTGATCTTTATAAGGTGATTTTACAAGGTTCAATGGTTGTTATGAGGACAGAATGTGGGCTGTTGTACTGTACATCTTTTACATTAAGTGAAGTCTGGTGTTTGACATTGTCAAAGTCTCTATAATGCAAATAAACACAAAGTCTATGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU549799 lncRNA upstream 14846 21027844 ~ 21028186 (+) True G483779
TU549782 lncRNA upstream 17355 21024851 ~ 21025677 (+) True G483778
TU549779 lncRNA upstream 17462 21024851 ~ 21025570 (+) False G483778
TU549786 lncRNA upstream 17581 21024666 ~ 21025451 (+) False G483778
TU549780 lncRNA upstream 17581 21024740 ~ 21025451 (+) False G483778
TU550621 lncRNA downstream 61005 21117552 ~ 21119475 (+) True G484479
TU550657 lncRNA downstream 84265 21140812 ~ 21141171 (+) True G484499
TU550658 lncRNA downstream 85680 21142227 ~ 21142621 (+) True G484500
TU550659 lncRNA downstream 86966 21143513 ~ 21147585 (+) False G484501
TU550660 lncRNA downstream 86966 21143513 ~ 21150744 (+) False G484501
XM_021605577.2 mRNA upstream 23420 21014389 ~ 21019612 (+) False LOC110525453
XM_036979587.1 mRNA upstream 23420 21014389 ~ 21019612 (+) True LOC110525453
XM_021605576.2 mRNA upstream 28770 21010776 ~ 21014262 (+) True LOC110525452
XM_036980155.1 mRNA upstream 58414 20962300 ~ 20984618 (+) False LOC110525116
XM_036979585.1 mRNA upstream 96090 20939811 ~ 20946942 (+) False LOC110525115
XM_036979592.1 mRNA downstream 5891 21062438 ~ 21098568 (+) False LOC110525457
XM_021605582.2 mRNA downstream 5894 21062441 ~ 21098568 (+) False LOC110525457
XM_021605584.2 mRNA downstream 6049 21062596 ~ 21098568 (+) True LOC110525457
XM_021605594.2 mRNA downstream 155027 21211574 ~ 21272145 (+) False ptgs1
XM_021605593.2 mRNA downstream 155028 21211575 ~ 21272145 (+) True ptgs1
TU549738 other upstream 79706 20958755 ~ 20963326 (+) True LOC110525116
TU549652 other upstream 239226 20802776 ~ 20803806 (+) True G483669
TU549560 other upstream 440030 20600818 ~ 20603002 (+) False LOC110525431
TU549559 other upstream 440030 20601325 ~ 20603002 (+) True LOC110525431
TU549525 other upstream 505934 20534509 ~ 20537098 (+) True LOC110525429
TU550839 other downstream 407592 21464139 ~ 21466905 (+) True G484674
TU550899 other downstream 497185 21553732 ~ 21554097 (+) True G484726
TU552088 other downstream 1384769 22441316 ~ 22444619 (+) True G485780
TU552480 other downstream 1617695 22674242 ~ 22674452 (+) True G486127
TU552742 other downstream 2134085 23190632 ~ 23191917 (+) True LOC110525518

Expression Profile