RNA id: XM_021605611.2


Basic Information

Item Value
RNA id XM_021605611.2
length 2232
RNA type mRNA
GC content 0.41
exon number 5
gene id fgf17
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21812367 ~ 21818773 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCGTAAAACATACCCAAAGTGCATCCATTACCATCTGCACCAGGGAGCTACAAAACCTTTTGCCCCAATATTTTCGACTTTGCAGTCAACTCTGCCCTGCCCACCCACAATACAAAACCTACAACTCTCAACTCGTGGGAGGGACCTGCCTTTCAACATTTAACCACTGCCCAGCAAGAGGCCAAGACGCGCTGAGTAAGAGGGCTTTTTAAACGTGTAATTACTTGGGGCTACATTGCGATACAGTGCCTATAGGTGACACTTTTCTTCCCTTGAAATAAACATCCAAATGGCAATAGCTAATAGTTTTTCATGTGGATTTTGGAAGTTTGACTCTAAAATGTATGATGGATCTCGGTGACTCTCTTGGTTGCAGACTTTTTGGATACTCTCAGGAAGACTTTCACACTTCAACACACATGCAGTAACTGGAGTATATGATGAATGGAATAAAACTCATAAACTAACAAGAGACACGGAGTGGACAGGTCAAGCGGATGCGAGGGAACTCTTGGATTATTTTGGATCCGTTGGGAATATTAGGCTACTTGCTCTCTGTGAAGAAAAACATTTGCGATTGGATGAAAGAATGTATGGAATAAATCTGCGCTGTATTTACATATCTTTTCATTTCTTCGTGTTGTGGTGCCATGCTCAGGGGGAGAATCACCCGTCTCCTAATTTTAACCAGTATGTGATGGAGCAGGGCGCAATGACGGACCAGCTTAGCCGGCGACAGGTCAGGGTTTATCAACTATACAGCCGGACCAGCGGGAAGCACGTCCAGATACAGGGCAAGAGGGTCGCCGCTACTGCCGAGGACGGCAACAATTACGCACGTCTCTTTGTAGAGACTGACACCTTTGGCAGTCGGGTTCGGATCAAAGGTGCAGAGAGTGGACGCTACCTCTGTATGAACCGGAAGGGGAAACTGGTTGGAAAGCCTGATGGCAGAAGCAGGGATTGTATCTTCACAGAGATTGTTCTGGAGAACAATTACACTGCCTTCCAGAATGCCAAGTATGAGGGTTGGTATGTGGCTTTCACCAGGAAAGGGAGGCCCATCAAAGCCTCCAAGACGAGGGAGAACCAGAGAGAGGTCCATTTCATCAAGAGGCTACACAAGGGCCCACTACCTTTCCCCAACATGGACAGAATCAAACAATTTGAGTTTATCAGTTTTCCACCCACCCGTCGAGCGAAACGGAACAGGAAATCACAGACTGCTGCCTAGTACAGGAAAATCGGACtattattgaggaaaaatgttaattttatttttgtatgtttttaaTATGTGAAGATACTTAAAATGCGAAAAAGTCTAAAGTAATTTTGTTGTAAAATGATCCCATGTAAATCATGTAAGAGAGTAAATGAGATTTATGTATATATTTAATAtgacagtgtgtatgtatgtgttttctTTTGCTTTTTGATTGGTCCCGTGACAGAGTGGGTATTGGATAGGTACATTAATAAACATGTTCAGCTTGGTTATCACAAAACTTAAGTGTGACAAATGCAACATTTGACCTTTAGATCATCTCTCTCATTTGATATGACTGCTTTCTTCGTACTAGTGCTGAAATTGATTTCTAAGTTAAGAAAAGCTCTTCAGAAATGTACAGGAAGTGGTAATGTTCTTGTGTCACAGATCAGTGTGTACAATCAGTGCATAAAGAAAATGTATCCAGTATAAAAATCTGTAGCCAAGTGGCATACCATTCTAACGAACTGCTATGCCAAAACATGATTTATTGCTCAGGTATGATTCTTTAAAtcatgggtgtcaaactcattccatggagtgCCGAGTGTTTgcgggtttttgttttttccttttaaTTAAGACCTAGAaaaccaggtgaggagagttccttactaattagtgaccttaattcatcaatcaagtacaagggtgaaGCGAAAATCTGCAGACACtctgccctctgtggaatgagtttgacacgtgctttAAATCATCTACCTACCAATATGTAGCCTAGCTACTGTACTTATAGTCAGAAATATGAAATAATTTGCTTACTATCAGTGAGACATGTACTGATTATACTTATTCAATTCCATGCTATTAATTATGTTGCTTAGCCCTACTGTTTTGTACAATTACGTAAATGCTTCATTCAACAACACCAATCAAACCAACTCCTAACGCCATTCATTTTCTGTGTAGGATGAACTTGTCATGATTCCAAATTGTCAATCA

Function

GO: NA

KEGG:

id description
K04358 FGF; fibroblast growth factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU551357 lncRNA upstream 442 21811717 ~ 21811925 (+) True G485121
TU551271 lncRNA upstream 102562 21709596 ~ 21709805 (+) True G485043
TU550806 lncRNA upstream 424926 21387157 ~ 21387441 (+) True G484641
TU550804 lncRNA upstream 426772 21385247 ~ 21385595 (+) True G484639
TU550784 lncRNA upstream 453850 21357776 ~ 21358517 (+) True G484619
TU551365 lncRNA downstream 7259 21826032 ~ 21826326 (+) True G485129
TU551329 lncRNA downstream 8853 21827626 ~ 21828343 (+) True G485093
TU551328 lncRNA downstream 9967 21828740 ~ 21831681 (+) True G485092
TU551330 lncRNA downstream 13389 21832162 ~ 21832821 (+) True G485094
TU551331 lncRNA downstream 14419 21833192 ~ 21834312 (+) True fkbp15b
XM_021604974.2 mRNA upstream 67630 21741044 ~ 21744737 (+) True LOC110525013
XM_021605600.2 mRNA upstream 358993 21445228 ~ 21453374 (+) True dpp7
XM_036979604.1 mRNA upstream 361391 21445228 ~ 21450976 (+) False dpp7
XM_036979601.1 mRNA upstream 367773 21391871 ~ 21444594 (+) False LOC110525469
XM_036979602.1 mRNA upstream 367773 21391871 ~ 21444594 (+) True LOC110525469
XM_036980446.1 mRNA downstream 14804 21833577 ~ 21847552 (+) False fkbp15b
XM_021605614.2 mRNA downstream 29077 21847850 ~ 21852139 (+) True LOC110525481
XM_021605615.2 mRNA downstream 35391 21854164 ~ 21863431 (+) False ccn1l2
XM_021605617.2 mRNA downstream 47106 21865879 ~ 21870071 (+) False si:dkey-90l8.3
XM_021605616.2 mRNA downstream 47151 21865924 ~ 21870071 (+) True si:dkey-90l8.3
TU550899 other upstream 258270 21553732 ~ 21554097 (+) True G484726
TU550839 other upstream 345462 21464139 ~ 21466905 (+) True G484674
TU549738 other upstream 849041 20958755 ~ 20963326 (+) True LOC110525116
TU549652 other upstream 1008561 20802776 ~ 20803806 (+) True G483669
TU549559 other upstream 1209365 20601325 ~ 20603002 (+) True LOC110525431
TU552088 other downstream 622543 22441316 ~ 22444619 (+) True G485780
TU552480 other downstream 855469 22674242 ~ 22674452 (+) True G486127
TU552742 other downstream 1371859 23190632 ~ 23191917 (+) True LOC110525518
TU553562 other downstream 1709967 23528740 ~ 23531799 (+) True G487078
TU553637 other downstream 1834347 23653120 ~ 23667927 (+) False G487146

Expression Profile