RNA id: XM_036980446.1


Basic Information

Item Value
RNA id XM_036980446.1
length 5161
RNA type mRNA
GC content 0.50
exon number 29
gene id fkbp15b
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21833192 ~ 21847552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAACTTGTTCCTTCTTTCTCTGTCCCCCGGGCTGAGATGCTCGGCGAAACGCATACCATGGCTCTGTAGGAAGGCGTTCTTCCTAGCAGCTTTCCAGACAGAATCCCTCTAGAATCTGGCAGTGAAGAGGATGATACCCCTTGGTCTTGAATCGTTTTGCTGTTGCTTCTTGCCGAAGCGATGCACAACGTCGATGGTATCACCAACTTTTTTATTCTCTGCAGATGCGGATAGCCTCTCCTCGCACATCTTCATTCTCCACATCTGGCAAGCCGTAGTCTCAGGTTCCATATTCTTGTGCATTGTTTCAGATCAGTGAGACGTCTATGGTAGACATTGTTATTCTTTTCCACACTTTTTTCAACTTATGCCACTCTCGTTTTCACATCCTTGATTTCACCACATGCAAACTCCAGTCTTTTTCAAGCCTTCGATAACCATGGTGTTCGTGCCAACCTTTTCTCAATGGCGTCAGACCTGGGGTTGATGAGTAAGGAGAGGGTGGCCACTATGTCAGAGTTCATGTTGGGTTTTTTGGAGGGTGGAGGTTTGCACGGAGTAACCGGTAAAGAGGGGAATTCGTCATCTTCAACAGCATTCGAAAGCATGATATTATCCATAGGCCAAGCGTAGTTATGGCAGTTGTCCATAAGCACGTTTCTCTCTTGTTGATTAGCAATAGAACGGCTAACTTCTTCCTTTCTTTTTTTGTCACGACTTTGTATAGACATGCCGAAATAAATAATCCAATTATTATTCAAGTAACAGTAAAAGTCTTATATCTTgaacaaataaaaatagtaatGACTGTAAACTTGTTTTTTTCACAATCTTTCTGAAGTTTGGTACGGAGCTCGGTAAAAAAAAAGGGTCTGTTCAAGCTGCCATCTTGGCACCTCCTCCAATAAGGCCATTACCCCGGAGCAGAACAATTCACAGTACCATGGATCAGGTGATATGTCAGCTGATGATCataagaaacaggaagagagattAGTTGGTGTCCTAGCGTTATTTCTCAATAAGTATTATATTTATCAACCCAAGAAAATCATAATATTTGAGAAGTATTATTGCTACACGAAAGAAAATACATTCAAAATGTTTGCCGCTGATGACGAGGATGGAGATTTTCTGTCGCCTACTGGAGGGGCAAAGCTGGCATCACTTTTTGGACTGGACCAAGCACCTAGTCAGGGGAATGAATCCTTCCAATATACAGCCCCTAAACAGCCTAGGAAGACCTTGAATCCAGGACCTCCTGCCCAGAAACCCACTGGCCCTCCTGGTGCTCCTGCAGTATTATTGGCTACAGCTATCCATGCTTTCAAATATCTTAATGGACAGTATCAGAAACAAGGAAAGCTTGGAGCTGCAGTCCTGGGTAACCACACAACCAAAGAGTACAAACTCTTGCTGTACGCCAGTCAACAGAAACAAGTGACTGCGGCCACGATTCATGTTGGGTTCGTCTTCACAGTTCAGCCCAGCAACTACTGCACTTTTTATGACGACCAGCGTCAGAACTGGTCCCTGATGTTTGACACAGACAAAGCTGCCGTGGACTTTTGTAAAGAGGTGTGTTTGGCAAAAGTGAACAGCGCCCCCTCCTTAGATATGGTGGTGGTGCAGGACCTGACACTAGGGGAGGGGCAGGGTGTTGAGAATGGAGACTCCCTGGAGGTGGCATACACAGGATGGCTCCTGCAAAACCATGCCATCGGACAGGTGTTTGACTCCAACCTGAACAAAGACAAGCTACTACGACTGAAACTTGGCGCTGGAAAAGTGATGAAGGGCTGGGAGGAGGGCATGCTGGGTATGAGGAAGTCAGGCCGGCGTCTCGTGGTGATACCCCCCAGTCTGGGAGACGGCTCCCAAGGAGTGGCCAACTGTGTCCCAGCAGACTGCACACTTATCTTTGAGGCAGAGCTACGACGGTTGAAGTTGGCAAAGGACAGTGTGTCTGACCGTGCCAGTGCTGGGTCTCGGGACTCTGCTGCCCCCTCACCTGCCCCCAGTATGGAAAACTTGGGCCCGGACCTCCCAGCAGGGCCCGCTCAGCCCCCTTCTACAAGCCCCGGGAGACCAGGGGAACCACTACTTCGGGCAAAGTCGAATTCCATCAGTgaacagttgacaAATCCAGATGCCACCAAAGCCAAGCTGATCTCTCGCATGGCCAAGATGGGCCAGCCCATGTTGCCCTTCATGGCAGGGCCCGCCTCTCAGCCAGACTCCAGTGACTCTGAAATGGAGGACCCCAGTGTGTCTAGACTGAAGGAGCGTCCTGCTGCTCCCTCTCCTGTGCAGATCTCCCCTGCCCCCCAAGCTCCAGTGCAAGTGCTTTCCTACCCTCATGGGGCACCACCCTCTGCCTTGATGCCTGTCGCTATGACAACTGCTGCTCCGCAGCCTGTGATGCCAGGCTCCGCCCATGCCTTTCAGCCTTATGCCTACCCACAGTCCTCTATGGCTCCCTCTCAACTTCAACAAATGGGCCAGATTTACCCCACCCAGACAGTGCCATACATGGGAGGCACTGGAGAGGTCACTTCCTTCCTCATGACTGAAGCTCGGCAGCACAACACTGAGATCCGATTGGCTGTCGGCAAAGTGGCCGATAAAGTGGACCAGTTGGCGTCAAAGGTTGACGACCTTCAGAGGCAAGGAGGCCACTCATTGGCTATGCCCAGTGTTAATATGGAAACATCCATGATTATGCACAACATCCAAAGAATCATTCAGGAAAATGAATCTTTAAAGAAGGATGTCTATGAGAAGAGCTCACGTGTAGAGGAGCAGAACCACAAGATTGGGGAGCTCATCAACCAGAACCAGAGATACATGGAGCAGAGTAACCTGCTGATGGAGCAGAGGAATGATTCCCTGAAGTCCTCCAGTGAACACAACCAGGTCCGGGTGCTGCAGGCTGAGCAGGACAAGGTGcgtctgacagaggagctggctACGTGTACAGCGCGGGTGTCCCAGCTGCAGCAGGAGGCCACGTCTCACCAGCAGAGGGCTGCAGAGCTGCAGAGCAAACTGACCTCTGCCCTGCAGGACAGtgacacacactgcacacacatcTCCTCCTTAGAGACCCAACTGGAAGAGCTAAAGGAGACGTCAGAGCGAGGCCAGGCCCAGTACCGTACAGAGAAGCAGAAACGCAAAGAGATGGAGCTCAGAGTAAacaacatggaggaggagttgcagGACCTGAAGATTGACAAAGAAAGTCTGGAACGAACGCtgtcagacaggaagaggaagtggCAGGCGGAGAGGCAGCGGTGtgatgaggagatggaggagcTGAGGAGGAGCAGCCAGCAGGACATGGACAGTCTAAAGACACAGCTCCGCAAGGCCAGGACCAGCACTGGCCAGGCGGCCTCAGAACAGCTAGCTCAGCTGCAAGCGGAGCTGGAGGAGGAGTGGAAGGGGAAGTGTGAGCAGGCGTTGGCCTCAGCCAAGGAGCAGCAGGGGCGTCAGATGTCCGAACTGGTAGAGCAAAGGGACACACTGGAGCAGAGACTGACCCAGCTACAGGAAAAGTTCTCAGCTCCTGAAGCAGTCCAGGGACTCAGAGGAGCAGGGCCTGCTACAGCAGCAGGTACAGGACGAGAAGCTGCAGGTCCTACAAGAAAAGTATTCAGGCCTGGAGGAGCAGTCATCAGCTATGAAACAGAAAGGCTGGCAGAGCAAATGGGCCAAGAGGACACTGCAGGGGAGGTGAAGCGTGTGATGAACGGAGTGTTCCACTCTCTGAGAGGGGAGTTTGACCTACATGAGACCTACACAGGCAGCGCTGTGCTCAGTATAATCGTCAACACCATAAAGAGTGTTACGTTGCAACTGCTCAACGTTACTGAGAGACCTTCGTCCCAACGGAGTGAAGAGGAAGAGGTGGTGGAGGTCAGTGATGTGAAGCTTCGAGAGGAGAGACCACCACAGGATGTCCATGTgaatggagaggaagaggaggagcagtgGGTAGAGTCAGAGCAGCCTAGTGAGGCCGttgggcagagggagggagacccCAGAGATGTGCAGGAGAGGGCTCGTCTGGAGGCAGAACCAGAGACCGAGAAGCCAACTAAGGTGGAACTAGCGTCAGACATCCACACAGAACCAGAGCAGCAATCACACTCAACCCAGCCACGACCAACATCTCCCGAGCCACTGGGAGAGAACACCACCGAGGCTTCGGAACCCACTGACATAAACCCTGAGGAGAATCTGCCCTCTGAGATGGGACAGCAATGTCAGTTAGAAGGTGATGTAATTACCCCAGAGGTGAAGAAAGTGAGTGTGACTATTGAGGGTCCCGTGGGTGAACTGGAAATAACTAGCCCCAAAGCCACAGGTCCTCCAACCCAGCCCCCACCTCCACCAAGCCCTCTGCATGACAGTCCTGGGAAAGTAAGtctgactgagggagtaggagaggaaaATGGAAAGGAGCCATTTTTCCAGAGCACAGCCCCAACcaaacccccaccaccacccactgaggaggaggaggatgagctgAGCTTGAAGGGGCGACCTCCCCCAGCCCCTCTGTTTGGCGATGAAGAGGATGAAGATCTTGACTGGCTGGGCTGAGCAACAACTGAAGTGATAAGTCTTAtgagtcttgaaggccatcctctAGAGAGATGATTTCCACTGTACTAGAAGAGACTATACCTGGATGAACATGTAGTGAACTCAGTCTCTGTCTGAGATAAGGGAACTCTGAACAATGTGCGTGAGAAGGATGTCCTGTCAGACTGCCCTGAACACTGCGGTTAAAGATCTGTGTGCCATGTTGAGATCTGTAGGGCTGCCCTGATTGCTGTTGCATGAAAGCCACCTTTGATCAATTAAGTCTGATGAAATCCACCAGAAATCCCCCCCATGCAATCAAAGTCAATCCATCCATTAGCCCTGTAATTTGTTGTTTTCATTGGGTCTTCGAGATTAAAAAGATGGTCTAGGGTATTTTAACTACTGTAGCTTGATGTTCATTTATCTGATTTGATTTAAGatgtctgtttgcttgttgtgtATTAATAATGAGGGCTTGATGCTTCAAGAACAtctcatttttaaaaatgtttgctgAGATTCATTccagaaaataaaaaaacatataaaaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU551330 lncRNA upstream 756 21832162 ~ 21832821 (+) True G485094
TU551328 lncRNA upstream 1896 21828740 ~ 21831681 (+) True G485092
TU551329 lncRNA upstream 5234 21827626 ~ 21828343 (+) True G485093
TU551365 lncRNA upstream 7251 21826032 ~ 21826326 (+) True G485129
TU551357 lncRNA upstream 21652 21811717 ~ 21811925 (+) True G485121
TU551371 lncRNA downstream 7419 21854971 ~ 21855307 (+) False ccn1l2
TU551372 lncRNA downstream 7956 21855508 ~ 21855712 (+) False ccn1l2
TU551373 lncRNA downstream 8219 21855771 ~ 21855978 (+) False ccn1l2
TU551377 lncRNA downstream 10721 21858273 ~ 21858493 (+) True ccn1l2
TU551390 lncRNA downstream 36724 21884276 ~ 21884582 (+) True G485151
XM_021605611.2 mRNA upstream 14804 21812367 ~ 21818773 (+) True fgf17
XM_021604974.2 mRNA upstream 88840 21741044 ~ 21744737 (+) True LOC110525013
XM_021605600.2 mRNA upstream 380203 21445228 ~ 21453374 (+) True dpp7
XM_036979604.1 mRNA upstream 382601 21445228 ~ 21450976 (+) False dpp7
XM_036979601.1 mRNA upstream 388983 21391871 ~ 21444594 (+) False LOC110525469
XM_021605614.2 mRNA downstream 298 21847850 ~ 21852139 (+) True LOC110525481
XM_021605615.2 mRNA downstream 6612 21854164 ~ 21863431 (+) False ccn1l2
XM_021605617.2 mRNA downstream 18327 21865879 ~ 21870071 (+) False si:dkey-90l8.3
XM_021605616.2 mRNA downstream 18372 21865924 ~ 21870071 (+) True si:dkey-90l8.3
XM_021605619.2 mRNA downstream 41438 21888990 ~ 21890997 (+) True bcl2l16
TU550899 other upstream 279480 21553732 ~ 21554097 (+) True G484726
TU550839 other upstream 366672 21464139 ~ 21466905 (+) True G484674
TU549738 other upstream 870251 20958755 ~ 20963326 (+) True LOC110525116
TU549652 other upstream 1029771 20802776 ~ 20803806 (+) True G483669
TU549559 other upstream 1230575 20601325 ~ 20603002 (+) True LOC110525431
TU552088 other downstream 593764 22441316 ~ 22444619 (+) True G485780
TU552480 other downstream 826690 22674242 ~ 22674452 (+) True G486127
TU552742 other downstream 1343080 23190632 ~ 23191917 (+) True LOC110525518
TU553562 other downstream 1681188 23528740 ~ 23531799 (+) True G487078
TU553637 other downstream 1805568 23653120 ~ 23667927 (+) False G487146

Expression Profile