RNA id: XM_021605617.2


Basic Information

Item Value
RNA id XM_021605617.2
length 1992
RNA type mRNA
GC content 0.47
exon number 5
gene id si:dkey-90l8.3
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21865879 ~ 21870071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCACCAAGAAGCGAATTAAATACCCGCTTGCGCAATTCAGTTAATAGTGTAGCTGTCAAAGACGCTAGTGATAGTTGAGAGTCGGATGATCAATGAGCTTCTGAGGGCTCAGCATGGTGAACAGTCAGCTGGGTGGTGGTGTGGCGTCACCCCCCAGGTCGTGTGCAGGATGCGGGGGGAAGATCGCAGACCGCTTCCTGCTCTTCTCCATGGAGCGCTACTGGCACACACGCTGCCTCAAGTGCTCCTGCTGCCACGCACAGCTAGGCGACATTGGCAACACCTGCTACAGTAAAGGAGGCATGATCCTGTGTAGGAGCGACTATATCAGGTTGTTCGGGCACAGTGGAGCATGCAGCACCTGTGGCCAGTCGATCCCGGCCAATGAGATGGTTATGAGGGCACAGGGCAATGTGTACCATCTCAAGTGTTTCACATGTGCCACctgtagaaacagactggtgccAGGCGACCGCTTCCACTATGTTAACGGCACCATCTTCTGTGAGCACGACCGGCCAGAGGCTGCACTGCTCAACAGCCACCTGCCCCCACTCCAGAGTAACCCTGTGCTGCCTGAccagaagGTGTGCTGAGTGGTTAGAGCGGTGCGGTGTGCCTTCATCCTTCCCTTGTCTCCAGAggtctctccatccctgctcctGATACTGTTGTTGTGGATCCTTTTTAATTTAACATTTTCTTAAAcaagtcaagtcagttaagaagaaattcttattttacaaggACGGCccaacccagacgatgctgggacaattgtgcgtcgccctatgggactcccgatcatggccgattgTGATACACCCCGAGATcgaaccaggttctgtagtgccgcctctagcactgagatgcagtgccttagacatcTGCGCCACTTGGGATCCTCATCACCATCCACCATCTTGTCTCTTTGACCAGGAGATTATTTTTACTTGCAGGATCAACTTCAGATGTGTTGTACATATCTATGCTTGAGACAGTGTACAAATACACCGTAATGGTGAGTCGTGTGTGATACAATGCTGGTCTGCCCATCAAAGACAATATGGACAACATTAACTACTTCAGGACTGAGGTTACATGTTGTACTGTAAGTAAGGGACCCCCAATTCTGTGCACATCCAGAACTTTGGTGCTTGTGGACAAATCTTGCCATGAGTTTTAAGGGTATGGCCTGGACCCTCTCCAGGAAGAATAAAGCAAATCAAAATAAGCTTTTCCGTGGAGTCCACTGTCATAGTGGCATTGCTGTGGTTATCATTATTGTCAAGAATAACCCATCGCTTAGATAATGAACTCAGAATCCCTCTCAATGGCCTCACATCTGTTCCTTTGTGATGTTTAAACCATCATATGAATTGGGCTGAAGTCAAGGAAGAAGATAAATGTCCAATATTTTTCTATAATGCTATTGTGTGTTTCCCAGTAGAGTTCTATTTCCTGAATTAATGTCTCATTCAATTGAATTATGGATGCCTGTTCAATATGTGAAATTATCAGATGGAGACAAAAAATGTTATTAAAAGACTTGAACTGAAGTAATTGAAGCCTATGTGCAGTTGGTTGGTCACATGACACAAGTCTTGCGGAATTACATGGTAAACTACTACCCAGTTGGTGTGGCATTTCCTCCCTGTTTGTGCTGCATAGCTCCCCTCAGCCCTGTATGGTGAAAGCTTGCCTGATTACCCTGAGGAATGGAATTAGAAGGCTACAGTCCTGACCATTTACAGAAGCAATTAAACTTGAGTGGTGTATCTGTGCTGCCTGCTACAGTTCCTGCTCCTGGGAGGCTGAACTTTGGCCATATCCCGTGGCTGACTTTATTAAAGACTAATCTGGGAGCCGGCCTAATTAAAGGGAGAGGCTCCTACGCATCCAGCCAGCGTGTCTTGTCTgtaggtaaaaaaaaacacaacaacaatCTGATGCTTGGACGGTTTACCATGTTGTAATTAAAAGACACAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU551377 lncRNA upstream 7386 21858273 ~ 21858493 (+) True ccn1l2
TU551373 lncRNA upstream 9901 21855771 ~ 21855978 (+) False ccn1l2
TU551372 lncRNA upstream 10167 21855508 ~ 21855712 (+) False ccn1l2
TU551371 lncRNA upstream 10572 21854971 ~ 21855307 (+) False ccn1l2
TU551331 lncRNA upstream 31567 21833192 ~ 21834312 (+) True fkbp15b
TU551390 lncRNA downstream 14205 21884276 ~ 21884582 (+) True G485151
TU551400 lncRNA downstream 40644 21910715 ~ 21911172 (+) True G485161
TU551401 lncRNA downstream 41825 21911896 ~ 21912118 (+) True G485162
TU551673 lncRNA downstream 95159 21965230 ~ 21965441 (+) True G485393
TU551696 lncRNA downstream 123452 21993523 ~ 21993846 (+) True G485415
XM_021605615.2 mRNA upstream 2448 21854164 ~ 21863431 (+) False ccn1l2
XM_021605614.2 mRNA upstream 13740 21847850 ~ 21852139 (+) True LOC110525481
XM_036980446.1 mRNA upstream 18327 21833577 ~ 21847552 (+) False fkbp15b
XM_021605611.2 mRNA upstream 47106 21812367 ~ 21818773 (+) True fgf17
XM_021604974.2 mRNA upstream 121142 21741044 ~ 21744737 (+) True LOC110525013
XM_021605619.2 mRNA downstream 18919 21888990 ~ 21890997 (+) True bcl2l16
XM_021605621.2 mRNA downstream 59062 21929133 ~ 21950200 (+) True LOC110525486
XM_036979609.1 mRNA downstream 227422 22097493 ~ 22105104 (+) False LOC110525487
XM_021605622.2 mRNA downstream 227423 22097494 ~ 22105104 (+) True LOC110525487
XM_036979610.1 mRNA downstream 325352 22195423 ~ 22214704 (+) False adgrd2
TU550899 other upstream 311782 21553732 ~ 21554097 (+) True G484726
TU550839 other upstream 398974 21464139 ~ 21466905 (+) True G484674
TU549738 other upstream 902553 20958755 ~ 20963326 (+) True LOC110525116
TU549652 other upstream 1062073 20802776 ~ 20803806 (+) True G483669
TU549559 other upstream 1262877 20601325 ~ 20603002 (+) True LOC110525431
TU552088 other downstream 571245 22441316 ~ 22444619 (+) True G485780
TU552480 other downstream 804171 22674242 ~ 22674452 (+) True G486127
TU552742 other downstream 1320561 23190632 ~ 23191917 (+) True LOC110525518
TU553562 other downstream 1658669 23528740 ~ 23531799 (+) True G487078
TU553637 other downstream 1783049 23653120 ~ 23667927 (+) False G487146

Expression Profile