RNA id: TCONS_00031983



Basic Information


Item Value
RNA id TCONS_00031983
length 790
RNA type processed_transcript
GC content 0.48
exon number 5
gene id XLOC_016210
representative True

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11651176 ~ 11662923 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TAGGATTCGCAGGATGCGTAACGCTAACCGGAAGTAAATGAGCGAGGCTGACATCTTCCACTCTGCCGATATGGCAGAAGTAAACCGCATCCACTATGAACTAGAATATACAGAAGGCATCAGTCAACAGATGCGGATACCTGAGAGGCTCAAAATCGCCTCCGGTTCTTCAGAGGAACCGCCTGGTCTCCTAAATGCATCTCACAGTACTATGATGCATGTGCCAGAAAGGATTGTGATTGCAGGAGATGATAATGACGCTCGCTTTGGAAGACCCAGAGATCTAGATTTGATCCAGTCTACTCCACTAGAAACAGTCGAACTGAAAACTCCACCACGGGTTCTTACCCTCAATGATCAACCTCTGGACTTCCTCGAGCCAGAGCCAGCAGCAAACTCCACTGCCCAGCCGAGAGAAGAGATGAAATCTCACTTTAGGTCAAGACGGGAGCGATGTAGGAGTGAAAACTCTACAATGCGTCGCAAtggacaaataaacaaacatgatttTGCAAGTCCGTCTCCATCTCGTGCTCCTGTCCGTGTTTGTCCCCCTCTTATAAGTCCTGAGGACAGTCAGAATTTAAACAGTGCCAGTGGTGTCCTCAATTACATCAAGAGCACGACTCGCAGGGCTTACCAGCAGGTCCTGGAGGTGCTGGACGACAGTCAGCGCGGGTGAGCTCTCACCGAAGCATGCAGTGGTGTTAATTATGCATTTGCAGAGTATAAATGTCAATGAATTAGTGATCGCCTGATGCCAGTATCTTAGAGAGCTGGGAGGCATTTG

Function


GO: NA

KEGG:

id description
ko03029 Mitochondrial biogenesis

Ensembl:

ensembl_id ENSDART00000136748

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00033779 lncRNA downstream 98429 11556975 ~ 11558124 (-) True XLOC_016208
TCONS_00031977 lncRNA downstream 318570 11337040 ~ 11337983 (-) True XLOC_016205
TCONS_00031976 lncRNA downstream 325237 11330724 ~ 11331316 (-) True XLOC_016204
TCONS_00031975 lncRNA downstream 398175 11251097 ~ 11258378 (-) True XLOC_016203
TCONS_00031964 lncRNA downstream 629362 10956221 ~ 11027191 (-) True XLOC_016200
TCONS_00031984 lncRNA upstream 97903 11760826 ~ 11767204 (-) True XLOC_016211
TCONS_00031986 lncRNA upstream 313338 11976261 ~ 11981305 (-) False XLOC_016213
TCONS_00033352 lncRNA upstream 314113 11977036 ~ 11978594 (-) True XLOC_016213
TCONS_00033780 lncRNA upstream 1041034 12703957 ~ 12704384 (-) True XLOC_016218
TCONS_00031994 lncRNA upstream 1157076 12819999 ~ 12821531 (-) True XLOC_016219
TCONS_00031981 mRNA downstream 7822 11633253 ~ 11648731 (-) True XLOC_016209
TCONS_00031980 mRNA downstream 143734 11508691 ~ 11512819 (-) True XLOC_016207
TCONS_00031979 mRNA downstream 151775 11483176 ~ 11504778 (-) True XLOC_016206
TCONS_00031978 mRNA downstream 152206 11483072 ~ 11504347 (-) False XLOC_016206
TCONS_00031972 mRNA downstream 187899 11216814 ~ 11468654 (-) False XLOC_016203
TCONS_00031985 mRNA upstream 185587 11848510 ~ 11912347 (-) True XLOC_016212
TCONS_00031987 mRNA upstream 356418 12019341 ~ 12079718 (-) False XLOC_016214
TCONS_00031988 mRNA upstream 376794 12039717 ~ 12051183 (-) True XLOC_016214
TCONS_00031989 mRNA upstream 441466 12104389 ~ 12243213 (-) False XLOC_016215
TCONS_00031990 mRNA upstream 491917 12154840 ~ 12242695 (-) True XLOC_016215
TCONS_00031958 other downstream 751374 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031915 other downstream 1909122 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 1909560 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031909 other downstream 1968368 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031903 other downstream 2112392 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031991 other upstream 561500 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031998 other upstream 1589229 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 3331470 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032037 other upstream 3365723 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032040 other upstream 3439180 15102103 ~ 15107716 (-) True XLOC_016253

Expression Profile


Expression of TCONS_00031983 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.
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Expression of TCONS_00031983 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.