RNA id: XM_021605676.2


Basic Information

Item Value
RNA id XM_021605676.2
length 5192
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC110525507
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22692800 ~ 22721327 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCCAGTGTTATCTCCTGGTTCTGAGGGAAGCAGTGATGTGGGCTCAGTGGACCTGTGGACTGCTGAGGAGTGGAGCCTTCTGTAGGACTCAGTCTATGTGCCAGGCTgccttcattactgtgagacacagagaggtagacagacagAACTCGACACAGGAGATcggagaggaggtggaagagggggCAGTCTTCACCATCACCCTGAGGAAGGTACAGTTGCACCAGTCGGCCAGTAAGGGACAGCGATGGCTGGGTGTGGAGACAGACTCTGCTCTCAGCCTGTATGAGACGTGTAAAATACGCACCATAAAGGCTGGTACGCTGGAGAGGCTGGTGGAATACATGGTGTCTGCGTTCAGGGGCAAGGACTCCACCTACGTCACCATCTTCCTCTGCACCTACCGCTCCTTCGCCACCACCAAGCAGGTGCTGGACCTCCTACTCAACAGGTATGCCAATCTACAGAAGCAACCTGTGATagatatacacagacacactcaggaTGACAGCACAGAGCTCAGAAACACTGTGTCATCCATCCTGGGGGCGTGGCTGGACCAGTACTCAGAGGACTTCTGGAGCCCTCCACAGTATAGCTgtctacaccacctgatgtcctACCTGCACCACCACTTCCCTGGCTCTGACCTGGAGCGCCGCGCACGCAACCTGCTGGCCCTCTTGCACCGCAGGCAGCAGTGTGAGCCCGACCTCGACGTGGAGCACATTGGCTGTCCCTTCGCCATGCAGGAAGAGAGTGGCTTTGAAGACGAACTAACTGCCCTGAACTTTTTGTCCTTTGACCCCATCATGGTTGCCGAGCAGTTCACACTCATGGATGCGGATCTGTTCAAGAAGGTGGTCCCTTACCACTGCCTGGGGGGCATCTGGTCCCAGCGGGATAAGAAGGGGAAGGAACACCTGGCCCCCACCATTCGAGCCACAGTGGCCCAGTTCAACTGTGTCACCAACTGTGTCATCACCACCTGCTTGAGCAACCCCTGTCTGAAACCCACCCAGCGAGCCAGACTGGTGGAGCGCTGGATAGAGGTGGCCAGGGAATGTCGTATCCTCAAGAACTTCTCGTCCCTGCGAGCTATCCTCTCTGCCCTGCAGTGTAACTCTCTCCACCGACTCAAGAGGACATGGGATGAGGTGTCCAGAGAGAATTTCCGCACCTTCCGTGAGCTGTCAGAGATCTTCTCAGATGACAACAACTACTCTCTAAGCCGAGAGCTGCTGGTCAAGgaggGCACCTCCAAATTTGCCACACTGGAAATCAACCCTAAACGAGCACAGAGGAGAAACCAACAGCAGAGAGACTTGGGGGTGATGCAGGGGACCATTCCTTACCTGGGCACCTTCCTCACTGACCTGGTCATGATGGACACAGCTATGAAAGACTACACAGAGAGTGGACTCATCAACTTTGAGAAGCGAAGAAAGGAGTTTGAGGTGATAGCTCAGATTAAGTTGCTGCAGCTGGCATCCAACAACTACAGTTTCACGCAGGACAGCTTCTTCAGGGAGTGGTTCTCAGGAGTGGAGAGACTCAGTGAggcagagagCTACACTCTGTCCTGTGAGATTGAACCGCTGTCAGAGTCATCCAGCAATACTATCAGAGCCAAGAAAAACGGCAGCATCATGAAACGCTGGAGCGATCGCCAGTTAACTGAGGCCAGCTGCAGCAGTGCAGGAAGCTCCCATTCCAAGTTGTTTGACCAGTCCCACATCAGACCGtaccagagagggggaggtgataGTGGGGACACCCTCAGCGTCACCTCAGCCGGCTCCAGTGGCTCTGACCTGGAGGATGTCAACGCCAGCTTCCTGTCTGACTCGCCAGATGCCCACGAGAGAAAGACCTCTACATCCTCAGTAAAACATTCCGTCTCTGCTTTGGGGAAAGAAAGCCAGACTCCTGATCCCAACTCCACGtTTTGGGAGTCCACCTCCCTGTCTTCTCTAGACACCTCAGGGATGGGTTCGGGCTCCAGCAGCGCCTCGTCCTCCTCTGTGtcctccaccactcctctcccagGTGCCTCCCGCTCCCACAAGCGCTCCGTCTCAGCCGTGTCCTGCTACTCTACACTCTCCCTGCCCCTCTACAACCAGCAGGTGGATGACTGCTGCATCATCAGAGTCAGCCTAGACGTGGACAACGGCAACATGTACAAGAGCATCCTGGTGACCAGTCAGGACAAGACACCAGCAGTCATCAGTAAAGCCATGGTGAAACACAACCTGGAGCGAGAGAAAACGGAGGACTATGAGTTGATGCAGAAAATCTCTGAAGAAAAGGAGCTGCGGATCCCAAACAATGCCAACGTTTTCTACGCCATGAACTCTACCGCCAACTATGACTTTGTGCTGAAGAAACGTGGCTTGTCCAAGAAAGGCCGGGCCAAGAGTGTAGCCAGCTCCACGCTGCCCCGCATGAAGCAGAAGGGCCTAAAAATCGCCAAAGGGATCTTCTGAGGACGAgtgtcccagctctctgtctgtctgatggatTAAGGCCCTCTAAATCCACCTAAGCTAAAGGATCTAAGAACTACACTAGAGACGGAGGCCAgtggaaaacaacaacaaatcatGTCTGCATGCATCACAAGCAGGCAGCAAAGCAGGAAAAGCAATTACCGTTATCAGACTGATGTCTTCTTGGCTCAGGCCTTGATGAAGGGGAGCTTAACAATGTGCTGTCCCTAACCCTTCGTGCCTAAGTTTGTGTCAGTGGTGTTTACAAAGGGAATATTATAGAGAGTGTATAGCGTACATATGGCCACGTTATAAACTCTCTCTAACTGTGTGGTGATTAGAGTGGTGTTGGTAAATGTCGTACTGAGGAGCATAGAGGAAGGCACAGAGAACAATGGTGGCCAGATTTTTTTAAGCCAAGTTAGTCTTGTGAGATAAAATactttttcaagagagacctggaCAAAGAGACCCGATGTGCTATCCTGGTGGGGTACTGTGAATAGATGGAAAGGTGGTCCATTGTAAGTTTGAAGAGTTGAATGCAGATACTGCCATATTGAATATGGGTCAAGGTGTGTGATCATTTCAGAGAAAACAAGGTGTGAGGAGTGGACACTCTGTTAAGAGACATACATCTTGTTTTATTGAATTACAACCAGGACAAGGAAGAATGACATTGCAGTGGGGCTCGATATGCTCAATTGAAACATTTCAACGATTATGAAGGGTTGGTGTAAAACTAAAAATAGATAAACAGTGAGGAGTGATAGATATTTACAAAATACCCACACAGTATAATATCAGCATTACTTTTCAATGGATCTTTATGTTTGATGATGTTACCATTACAGTTAGGCTATTTGTTTGGTATTCTTTACTTTGCTATGCTGCTGCTAAATGTACATTTTATAAAAAATCAATAATTCACCTTATTTTTTTACAAACTTTTTGGGGGTGAGGACAGGCATGACGTTGGGACTCTCCGATGACGGCGTTGTATTGAGTATCACTAAGTGATTCAGGGGCTCCGATGACAGCATTTCATACCACCCGTCCCTACTGGACTATCTCTGTATGGAAAACAATGGTTTACATCTTTGTACTGACAGTGGGATAGTGGTATCATGTATAATCTGTAACTGCCAATGATTCTCCTTATGGCTGCCCAATGCCTGCTCCATGTATGCAAGAGGAGGTAACAGTCCTCGCCTCACCACAAAAAGCAGTGCACTAACCCACACCAGCTTCTTCTTACTTACAATCTTAAAGACAGAGTGAGAGTAATGACACAAACTCTGAGATCCTTACAAGCATGCCAGTGGTTGTTTTATGTAATGGAAAGTACAGACAAAAAGTAGTTTGTCATTTCACTGACATTACATGCCTTTATTGCTCAGTGCTGCATGCTGGTCCCAGCCCCTTTAAATGGCTTTTTAAAACTGTCCTTTCCTTGATGACCATGATAGAACCATAGAGGTAGGGGAAAGCAATATGGTGTAAACTCCCCTGTGATGGGTACTATCCAGACCTCTTGTATGCATGGCGAGGAAGGGGCGGGGAAGAGGCTGTTCTTTTGGAACATACATAGCATAATGATTGGTTGTCTCTGCTGTGCTTTGTCACTGTAATTTGCTACTTACACTGTGAATGGGTCTTTGCCGATCACTCTGATTGGCTCCCTTCAATGCTGAAcactgtgaacacacacacattggtcgTGTTCctctgctcagacgttgcatgcatcaatCAATGGTTGTGTGCCACATCATCGGCTGTGCAGTCGGGaaccagattgctataacatatgattTGGTTTGCTGACACATAAAATACCCATCTAGGCATTGTAAGATCTGTCATGCATCAGCAGCATCTGAGCAGAGGAATTAcgacccttctctctctgtctcgctctccattATGACACAGTTAAATAGGAAAAGTCAACCCTGACAGAGAATAGATAGAGGTCCATGTAGTGATAGAAATGTGTTCAGGGCATGGAGAAAAGGTGGCAACTGGTTTACCACTATATGTGCCAAAGAGATGAGGGGTCTGTCACTCTCAAAAGACAATGTTTGTTTCATTTCTCTATCACTTGAATTTTCTAGGGGAGTTTACCATTTCTGAGTGTTATGTTCTGAACACTACAACACCATTCTAAGAACCTCAGATACACTGTTCAAGCTTAGGTGGCAGTGTGGTTACTACTGGTTACCCTTGGAGAAACTGCACCACTTCCCTAAATAGTAACAGTCCTTTGGTTCTTTTCAAAGAATGGGTTCAGTATAATTTATGCTTTACATAAGTGGCTGTGTTTACTACCACTTGACTGATTGTTTTCTGGTGTTATTCATAATTACTGGAGCTTGCTTTGCTTGACCTGGAATGACTGGTCCTCTGCAGATTTATTTTACCTTATCTGTCGCCTTTGCCATTATAACTGAGTTAAAACCTTTGTATGTGTTTGCAGTGTCTTGTCTCTCATGTTTTTCTATTCCTAATGAATTAACAGAATATTGAGATGTCATACTATATGGAATTGTCTTTGTTTATGTCTTTGTTGACCTGGCATTATTTATTGGTTTGTACAGAAAGATTTTGTTATGCATTGTATATTATTTCCTCTCTTGTGTAATTATAGATTATTATATATtcatgtaaatacaaataaacactTAAGTTTACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU552482 lncRNA upstream 22011 22678812 ~ 22679031 (+) True G486129
TU552478 lncRNA upstream 28955 22671751 ~ 22672087 (+) True G486125
TU552439 lncRNA upstream 75172 22625464 ~ 22625870 (+) True LOC110525499
TU552414 lncRNA upstream 111081 22589758 ~ 22589961 (+) True G486069
TU552184 lncRNA upstream 180180 22520587 ~ 22520862 (+) True G485862
TU552464 lncRNA downstream 9663 22730990 ~ 22732203 (+) True G486111
TU552468 lncRNA downstream 11037 22732364 ~ 22732608 (+) True G486115
TU552494 lncRNA downstream 11373 22732700 ~ 22733291 (+) True G486141
TU552497 lncRNA downstream 12146 22733473 ~ 22733829 (+) False G486142
TU552495 lncRNA downstream 12262 22733589 ~ 22733829 (+) False G486142
XM_036979629.1 mRNA upstream 44659 22646328 ~ 22656383 (+) False LOC110525503
XM_036979633.1 mRNA upstream 44659 22646328 ~ 22656383 (+) False LOC110525503
XM_036979628.1 mRNA upstream 44660 22646328 ~ 22656382 (+) False LOC110525503
XM_021605662.2 mRNA upstream 44660 22646351 ~ 22656382 (+) False LOC110525503
XM_036979630.1 mRNA upstream 44661 22646328 ~ 22656381 (+) False LOC110525503
XM_021605682.2 mRNA downstream 307 22721634 ~ 22727163 (+) True LOC110525510
XM_021605686.2 mRNA downstream 32942 22754269 ~ 22757520 (+) True gstt1a
XM_021605684.2 mRNA downstream 38114 22759441 ~ 22766009 (+) True LOC110525512
XM_021605687.2 mRNA downstream 55599 22776926 ~ 22781759 (+) False LOC110525516
XM_021605688.2 mRNA downstream 56453 22777780 ~ 22781759 (+) False LOC110525516
TU552480 other upstream 26590 22674242 ~ 22674452 (+) True G486127
TU552088 other upstream 256423 22441316 ~ 22444619 (+) True G485780
TU550899 other upstream 1146945 21553732 ~ 21554097 (+) True G484726
TU550839 other upstream 1234137 21464139 ~ 21466905 (+) True G484674
TU549738 other upstream 1737716 20958755 ~ 20963326 (+) True LOC110525116
TU552742 other downstream 469305 23190632 ~ 23191917 (+) True LOC110525518
TU553562 other downstream 807413 23528740 ~ 23531799 (+) True G487078
TU553637 other downstream 931793 23653120 ~ 23667927 (+) False G487146
TU553786 other downstream 1190494 23911821 ~ 23914250 (+) True LOC110525563
TU554703 other downstream 1858634 24579961 ~ 24586313 (+) True G488049

Expression Profile