RNA id: XM_021605687.2


Basic Information

Item Value
RNA id XM_021605687.2
length 2454
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110525516
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22776022 ~ 22781759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTGTTGGTCTCGCAGGTAACGATGTGGCCCTCAGCTTCATGAAGGACTTTGATTGGCACTCCAATGGACATCTTTCTGAGCACCACCACAAATACAATGATGCTGTCCTGCTGAATGTACCCGTCATTCGGCAGCTGTACCACTGGGACTGTGGATTAGCCTGCTCCAGAATGGTTTTGAAGTACCTCCACCCTGTGAGTGATGAGGAGTTTCAGGGTGCTTGCTGGGAGTTGAAGCTGACGCAGAGTGTTTGGACGATTGACTTGGCCTACCTCATGTGCCAGCTGAGGGTCCGGCACCGCTTCTGCACTCAGACACTGGGTGTTGACAAGGGCTTCAGGAATCAGTCATTCTACAAAAAGCATTTTGACACTGAGGAAGACAGAGTCAACGAACTCTTCCTAAAGGCTGAAAGCAAGGGTGTGGTGGTGAATAAATGCTCTGTGACAATTCAGGAAATCCAGGAACATATTTACCAGGGCCATGTGGCCATAGTGCTGGTCAACGCTGTGGTTCTGGTGTGTGAACTCTGCTCTTCGCCTGTCAAGTACTGCTGTTTCCTGCCTGTGGGCCAGAAGTGCTTCTGCAGGAAGCCAGAATACCAGGGTCACTTTGTGGTGGTGTGCGGCTTCAACCGGAGCACTGGCTGCATCTTCTACAACAACCCTGCCTACTCAGACCGTGTGTGTTGCACCAGCATTAGTAACTTTGAAGAGGCTCGAATGAGCTACGGGACAGATGAGGATATTCTGTTCATCTTCAAGGAGAGCTGATGGCTTCGGGACAATGAAGATGCAGATGGTCTCCACATCGCTATGGTGCCCCATCCTCACTATGATGACACATCAGTGGGTCTACAGGTCCCTGAACTGGGACTGCTGGTTCCAGCTCTTGCCCAGTGTTGTAGATGGTCCCGGGCTGTCCTCTCCAGTGCTAACTGACTGCTCACAGAACACACATCACTCCAACGTCACCACACCAGCCTCACTTCACATAGCCCATGCTAGTCGTCAGTGTGTAAAGGAATAATCACTGAAGACATAAATAAAGTGTGGTTTTTAAGTTGGTTGGGGGACAAGCAGATAGATGAAATAGAATAAAGGAATTTTTCCTGTGTCCCATTTTGTTTAGTTTTACTTCAGTTAGTTGATTCTACCAATTGACGTGTGAAGAGTGAGCAGTGCAAGACTTGAAATCCTATTTCTAATGCTGGGTGGAAAAAATAACATGACACTCAAGTTGATTCTAGACTTGTAGAGGAGGACAAAACAATGCACATACAAGGGCTTATGGCAACATGATGCTCTCTTTGGTTTTACCTGGTGTCATGCAAGTCTGATGGGCCATGTATTGCTGCTTTCCTCCCCTTAGACTAGCCTGGTCTTATTTTATTAATAGTTATTTTGATACTGTTTGTTGAACttcatgtattatttagtatttTCTAATAACATGGAATAGAGGGAGAAATTGTTTTTGAAAGACTCAGGTAATTCATGTCCATAGAGTCTGATGTGTTGTATTACAATAGCAAACCCATGTTACAAATGTATTTTCTTTAATGCAATACACCTTGACCCATTTCCTGTTTATGGAACCAAATCTGCCTGGCAGGCCTAGGTGTCAGTCATCAGGACATCATGTTCAACCTCAGCCTGCTGCTTTGTACAGACTTTGCTTTTGTTGTGTGAACCGATGATTACAGTCCATGTCAGTGTCATTCACATCAAGGagattattacagagaatcagctATAGTTTCAACTGaaggcagtggaggctggtgggaggagctataggaggatgggcccattgtaatggctggcatggaattaatggaactgtatcaaacatggaaaccacatgttcgAATCCGTCCcgttaattccattccagccattacaatcagcctgatcctcctatagctcatcccaccagcctccactgtctgACGTTTTTTCAGTGTTGCACTACATGCCTCGATCTCCATGCTCTTTGAGTTTGGAAAAGGGAGAATGGAGACACAGTGGAAAGTGTGAAGTACTCGGTACGAGGTAGATGGATGCCTTGCAGGTTTTGCTTCAGTATATGACTCAACACTACCTTCCGAGTTAGGAATTATTAGATCATAAGATATTTTCTGTTGAAAATAGCAATCAAGTGGAGGCAACACACAGAATGACTTCATTATTCTCtttcaacatttatttttatattttggtATCATGGATGATGTTATTGCACTTTGGTTTTTGTACCAGCCATAATTATGTATTATTTAATTTTCATTTTACCATGATAACATATTTTCCCAATCTAGATGGGATGACAATGATTTATTCCTGCTTGTGTATTTTTGTTATGAACAAATGGAATGTGTTAAAATTgctttatttttatgaaatataCAATTCCATTTATGTACTGTACTCATTAAAATAATTTGAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU552521 lncRNA upstream 25802 22750913 ~ 22751124 (+) True G486159
TU552515 lncRNA upstream 30256 22746262 ~ 22746670 (+) True G486154
TU552513 lncRNA upstream 30361 22746262 ~ 22746565 (+) False G486154
TU552510 lncRNA upstream 31909 22744652 ~ 22745017 (+) True G486151
TU552509 lncRNA upstream 32489 22743836 ~ 22744437 (+) True G486150
TU552643 lncRNA downstream 170894 22952653 ~ 22953950 (+) True G486246
TU552722 lncRNA downstream 279230 23060989 ~ 23062352 (+) True G486313
TU552717 lncRNA downstream 280977 23062736 ~ 23064014 (+) True G486312
TU552812 lncRNA downstream 399594 23181353 ~ 23227167 (+) True LOC110525520
TU552825 lncRNA downstream 469811 23251570 ~ 23252499 (+) False G486411
XM_021605684.2 mRNA upstream 10917 22759441 ~ 22766009 (+) True LOC110525512
XM_021605686.2 mRNA upstream 19406 22754269 ~ 22757520 (+) True gstt1a
XM_021605682.2 mRNA upstream 49763 22721634 ~ 22727163 (+) True LOC110525510
XM_021605678.2 mRNA upstream 55599 22698845 ~ 22721327 (+) False LOC110525507
XM_036979657.1 mRNA downstream 28962 22810721 ~ 22814092 (+) True LOC118964854
XM_036979652.1 mRNA downstream 36565 22818324 ~ 22823007 (+) True LOC118964852
XM_036979653.1 mRNA downstream 45324 22827083 ~ 22831756 (+) True LOC118964853
XM_036979664.1 mRNA downstream 50571 22832330 ~ 23332415 (+) True LOC110525522
XM_021605709.2 mRNA downstream 153649 22935408 ~ 22957089 (+) False ift81
TU552480 other upstream 102474 22674242 ~ 22674452 (+) True G486127
TU552088 other upstream 332307 22441316 ~ 22444619 (+) True G485780
TU550899 other upstream 1222829 21553732 ~ 21554097 (+) True G484726
TU550839 other upstream 1310021 21464139 ~ 21466905 (+) True G484674
TU549738 other upstream 1813600 20958755 ~ 20963326 (+) True LOC110525116
TU552742 other downstream 408873 23190632 ~ 23191917 (+) True LOC110525518
TU553562 other downstream 746981 23528740 ~ 23531799 (+) True G487078
TU553637 other downstream 871361 23653120 ~ 23667927 (+) False G487146
TU553786 other downstream 1130062 23911821 ~ 23914250 (+) True LOC110525563
TU554703 other downstream 1798202 24579961 ~ 24586313 (+) True G488049

Expression Profile