RNA id: XM_021605696.2


Basic Information

Item Value
RNA id XM_021605696.2
length 7881
RNA type mRNA
GC content 0.51
exon number 22
gene id LOC110525520
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23181353 ~ 23227167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCGATTCGCAGCGATGGCGACTCGATTCTTCTACGGGACGTATTGAAACTGGCCTCGGATATGACAAATGTATTTCCTAACGTGTAATTTATTGCAAACCCAGTGCACGGATCTTCAACTGGATCATTAACGTTTCTATTGTAATTGCTTTCTCTCTGAATTCAATGTCTTCACTAACTGAAATTTGCAAAACAGGATCATCAGGATAGCACCTCATCTGTTGCTTGTTCTCTTTTGACTTATATTTGGGGTCCAGTGAAGAAGGCCTGTGTTCCTTGTCCAGTGACCCACACTCCTTCACAAGGGCCATGgaggaggaggggccgCAGAGCATGGAATGTATCCAGGCCAATCAGATCTTCCCCAAGAAGCCCCCAGTCCTGGAGGAGGGGAGCCTGCAGGTGCCCTTTCCCGAGCTGCATGGGGAGTTCACAAAGTACGTGGGGAGAGCGGAGGATGCAATCATCGCCATGTCCAGCTACCGCCTCCACATCAAGTTCAAAGACTCCATCGTAAATAGTGACAGTTGTTGTGAGGTGTCAGTCCCTCTGCAGCTCATAGAGACTGTGGAGTGTCGTGACATGTTCCAGCTCCATGTCACCTGCAAGGACTGTAAGGTCGTCAGGTGTCAATTCTCCACCTTAGAGCAGTGTCAGGAGTGGTTGAAGCGGCTGAACGCTGCGGTCCGCCCTCCGTCTTGCTTGGAGGACCTCTTCTCCTTCCCCTTCCATGCCTGGTGTGTGGACGTGTATGCCGGGGAGAAGGAGCAGCACGGGGAGCTGTGCAGGCCAGGAGAGCATGTGACCTCCTGGTTCAAGAATGAGGTGGAGAGGATGGGCTTCGACACTCAAAACGCCTGGAGGATATCTGACATCAACAGCAAGTTCAGGCTGTGCTCCAGCTATCCGCAGCAGCTCCTGGTGCCAGCCTGGATCACAGACAAGGAGCTGGAGAACGTGGCAGCCTTCCGCTCCTGGAAGAGGTTCCCGGCCGTTGTGTTCAGgCACCAGAGCACTGGGGCTGTGATCGCCCGCTGCGGCCAGCCGGAGGTCAGTTGGTGGGGCTGGAGGAATGCAGACGACGAGCACCTGGTCCAGTCCATCGCCAGGGCATGTGCTGTGGACTGCAGCTCCCGCAAACACCTGGCAAACGGATCCTACatcaatggaaccaatggaatcaTCGGCACCAATGACCTCGTGGACACTGACTTCGAATCGTCCCTGACGAATAGCTCGGAGGTAGAGACACTGGCCATCCAGCCACAAAAGCTGCTGATCCTGGATGCCAGGTCCTATGCAGCGGCTGTGGCCAACAGGGCCAAGGGAGGGGGCTGTGAATGCCCAGagTACTACCCCAACTGTGAGGTTGTGTTCATGGGCATGGCCAACATTCACTCCATCCGCAAGAGTTTCCAGTCCCTGCGCTTCCTCTGCACCCAGATGCCAGACCCGGCCAACTGGCTGTCTGCTCTGGAGAGCACCAAGTGGCTGCAGCATCTGTCTCTGCTGCTGAAGGCTGCCCTGCTGGTGTTGAACGCTGTGGACCGCGACCACAGACCTGTTCTGGTGCACTGCTCTGACGGATGGGACCGCACGCCCCAGATCGCTGCCCTGTCCAAGCTCTTGTTGGACCCATACTACCGCACCATTGAGGGTTTCCAGGTGCTGGTGGAGACTGAGTGGCTGGACTTTGGCCATAAGTTTGCTGACCGCTGTGGCCACGGGGAGAACTCAGAGGACCTGAACGAGCGCTGCCCGGTCTTCCTGCAGTGGCTGGACTGTGTTCACCAGCTCCAAAGGCAGTTCCCATGCTCCTTTGAGTTCAATGAGGCCTTCCTGgTGAAGATGGTGCAGCATTCCTACTCGTGTCTCTTTGGCACCTTCCTGTGCAACagtgggaaggagagggaggaccgTCAGGTTCGGGAGAGGACCTGCTCCGTGTGGTCACTGCTGCGACCAGCCAACCGCGCCTTGAGGAACATGCTCTACTCCTCCCACTCCGAGACTGTGCTCCACCCAGTGTGTCATGTACGTAACCTGATGCTGTGGACGGCAGTCTACCTTCCCAGCTCCTCCCCCACCACGCCCTCTGACGAGTCGTGTGCACCCTATCCTGTGCCAGGTGCCAACCCTGAGGACACTCCCCTGGGCAGACGTCCAAAGACCCGTTCCTTCGATAACTTGCCCAGCGCATGTGAGCTGGGGAGCTCGCTGGCCCCAAACCGGCGCTCCAGTGACCCAAACCTGAATGAGAAGTGGCAGGACCACCGGCGCTCTCTGGAGCTCAACATCGCTATGGGGCCCGACGGAGGGGGAGCTCAGGAAGGGCGTGCTAACGGCCAGCCTGGAGCAGCAGGGTCTCAGGCAGGCACGGCCGACTCTGAGCCGGAAGACAGCCCTGAAGGAGGGCAGATTGAGCTGAGAGACAGAGCCTCCAAGGGGTTGTTAGCAGCAGGAGAAGAGCTTGAGCTCTCCATTGAGCTGGCTGTGgcagagggacagatggagaaCATTCTCCAGGAAGCAACAAAGGAGGAGGTTGGTGCTGATACTCAGAGAGAAGCGAACGCTGCTGCTCCTCCTATTGCCGTGGCTCAAACTCTGATTGATGCTAATGTTaatggaagagagatggagaaagaggccAGCACCAGTGATGGTAAGGCTGATAAACAAGCTAACATCAATGGGGCTGAGAATCAGACGGAGGCTACTATCACTAATGGGCATCACCCAGAGAAGGGCACAGATGAGCCTGAGGAGGAGTCTAGTGTCTCTCCAGGCAGTCCCACAGACGTTCCAGAGGAGCAGGAGGTGGCCGTTCCAGAGGAGCAGGAGGTGGCCGTTCCAGAGGAGCAGGAGGTGGCCGTTCCAGAGGAGCAGGAGGTGGTAGAGAAGCAGGAGGAAGTGCTGGTGAAGCATGTTCTGGTGAACCGTACTGCCCAGGAGGAGCCAGACCACAACCCTAGCACCAgcacccccagcccagcccacgcTGCCCTTAGAACTATGATCAATGGCTTTGGAGAGAGGACACCAGTGGCTGCTGAGAATCACCTTCCACCAGAGCTTAAGTCCAGCAGACATCTCTCAGAGGTCCTGGTGCAGGCTGACAAGAGGGCCTCCCTCATGGAGAGCTCAACAGAGACTCTGACTGAAGAGGCCTGCACCAGGCCAGAGGCCCCAGTGCAGGTATCCATCTGTGCAGGCCCCCAGCCCTGCTCTGAAGGCAGGAGTCAACCCCCCTGCCACAGGAGAGTGAACGGGGAGGCAGAGCCAGAGCAGGGGGTACCCAGGACTTCAAATGGAGGACACAAGCGGCCCTCCGTCAGTGCCTTCCAGTCTTTGAGTGCTGATCCCAGCAGGGAGGGACTGTGTAATGGCGAGAGCTTGGAGGGGGAGACCTGCAGTGGCCCTCACTGGGCCAAGGTGAATGGGGAGCGGGCCCCACTGAGCCGCCAGGTGTCCCTGGCCTCCTGCAGCTCCCTGACCCACCACCGCCGGGGCAGCTGCTCCCAGCACCGCTGCCTCCATGCCCTACTGGGGCGCCCTGCCGCCACACCCAGCCCCGAGCAGCCGGCCCGCAATCACCTGGACGATGACGGGCTGACGCTCCACACGGACGCCATCCAGCAGCGGTTGAGGCAGATTGAGGCAGGCCACCAGATGGAGGTGGAGACACTGAAGAAGCAGGTGCAGGAGCTGTGGAGCCGCCTGGAGAGCCATCACCACGCAGCATCCCTCAGGATCAACGGAGATATGGGAGACGAAGTGACCTCAATGACAGACTCTGAGTATAACCTGGATGCTAGCTGCCTGTCCCGCTGCAGCACAGAGCTCTTCTCAGAGGCTAGCTGGGAGCAGGTGGACAAGAATGACACTGAGGTGACCCGCTGGTACCCGGACCACTTGGCAGCCCAGTGCTACGGGTGTGAGAGTAGGTTCTGGCTCGCCACCAGGAAGCATCACTGCAGtgacagGGAGCCTGTCCAAGAGGTCTGGAACTGTGGGAATGTATTCTGTGCCAGCTGCTGCGATCAGAAGATACCCGTGCCAAGCCAGCAGCTGTTTGAGCCCACCCGTGTTTGTAAGACCTGCTACGGCAGCCTCCAGATCAATACAACTCCCAATCCCATGGAACTGGAGCTGGAAGAACCCATCACAGCCAGCTCCAACTAGGGCCCTGGGAGGGGCTAGGCCGAGCCTCCCAGCCAATACTCAGCTAGCCACTGACACGGTCAGGCACTCTACTGATGAGCTCAGGAGCTGCAGAATGTCCCATGTACGTGTGTGCTGCAAAATATGGATTTTCATGTATATAGGTCTGCAATGCCAGATGTAGTGGAGGAGGTGAACAAGGTGTTTTTGCTAGATGCTAAGCACTTTGAATGGTGGTTATGCACAGGAATGGATGAATGGACAGATTGATGGGTGTGTGACAACACACAGAGGACTGCTGGTAGTGTTTGTCGACGTGGTGTAGGACTGGGACAGTGATAGAGCAAGGATAGCCTGTCTGGTCCCACTGTCCAGGGGGGGCACGAGAGGGTCATCTCCGAATGATGCTGCAAAGTCTTCTTGAGGGCTTGTGTtctgttcatttttttttttttttacccacttATAGTTCAATTACAGGAGTGGTACCATCATCCATCCCCTAGGGACTTTTCTGAAGCTCCAGTGCTTCAGAAACCACTTCTAGTGTCCAGAATAGGCCTGGACTGTGTTGGCAAGACCTTCCATTGACTTCTGGGGAACACCTGGATGAACTTGGGCAGAATTTCAACTTGCGTTATGTGTCTGAAGTTAGGACTCTGCCCTAAGCAGGGAGGGTATTTGGGAGTTACTGAGATCTAACAAGTGTTAGTTTTTGAATTGCATCAAAGTATGAATCCTCTCCTAGCTGGTTCCATTTTGCAACTCTCTTGGCGTGAATAGGTGCCACACACTAATGGTAGACGGTGTAGATAATGTTGACAGCTGGTATTATGACAGAGCTTCTGAACcaatgccgcgttcaaaacaactgggaactcagatcAATCATGTCAGTGATCGtcaggtcggaaagtcagagctctagaaagaggcctgaatGCCCAAGTTGGAATTCCGAGCTGGATGACTGTTCACATAGATTTTTACCAGTCGGAACTAGTTTTTTTTtacgagtttccagttgttttgaacacggcataAATTTAATTTGGCATTGTCACTTGTTTTCAGAGACCTAAATAAACTTGAGGAGAGGCTGTGGAAATGCATTCATTTACCCATCACTTCAAATTAGGATGACCCCCCCCCCAATTTACCCAGCAGGCACTTGGACATGACATCACGTTCAATCCATCACAACCAGGGTTTAATAGGAAGTGGTGTAATGGTTGTCATGGGGTCACTAAAGGATGTGCTTTAGTCATGTTACTGTCTCAGTGTCCTCCTGTGATGACAGGAACTCATTTACCAATGTGTCCTCATCTGCAGGATGGGTGAATTTATTACCCAACACTGACTGCTTATTTAGTAACTAACTTCCTTGCTATTAGTTGAGCATAATGAAACAGCCCTAAAATATGAAGTTGAGTCATACACGCATCACAATCTTTCCCTTTGAACATCCTCAACCACCATTGCGTCATGTCCTATATAAACCGAGGAAGTGCTGGATAGTACAAGGGGATGAAATGTATAGTACCTTGTCTCTGTGGAACATCCAGTGTTGTTCTCTTAGCTGGTTAGCTCGGTTTTCTCCTGCTGAATTGAGAAGTCACTTATTTCATCTCTCTTCAATAAACTCCTCTCAGATACATTTTTGCAACATAAATAATATATTCAGATAAGTATATAGCGTTTAAGAAACGATGTATAGAAGAATCCTTTTATAGTGGCTTACCAAATTAGTCACCATAAACCTTTTCATTTCTATCTTTTTGCTGATTGCTGGAAAAAACTATAATTTCAACCTGTTGGAAACGGGaatctttatttttttaaggGGGCATGTTCCTGTTTTGATGCTGCAGTGGTTTTCCATTTGATTGCGATCAGTACCTGTTTTCATTATTTATTGATGTTGTATTCTTGAATTGCTGTCTCAAATTTAGACAATTACATTGCCACAGGATAATCCGTGTTTATCAGTAGTGGATCTGAAGGGCCGTGAGAAAAGATGGCCCAAATCGGTGAGATTCCCATGCACTGACAGAATGGTGGTCCGAAACAACAACCTAATACTATACCCCCACCTCCCACTCACATACGGTCACGCATACCCCactcatatacagtacatgtacacaCTACCTCTACCATACAGACAGGAGCTCCACACACTCGTACATGCACACAGATATTCTCACTGTGCTTGTAGTAGTTGATATTTGCTTTTCAGTTGTTCGCCATCAATATTGGCCTTTTTGTTATTAATGATTTTTGGGTTTTACGAGCATTAAATGTACAAATACAACCCTATACGATGTCCAAAATGATATCCTTCAAGACTGCCAATCATTAATAATGCCACTTGTCGTACTAGCAGGACACAAATGAATCACGGGATTTCAGCAATTGTTATTATTCACAACTCTCTACCTGATCAGCAGACTGTGTGAAAGAGCCATGTATAGTTTGGACAGCCATCTTGTAAACCATCTGAGGGCTTAGACCAAACTCTTGACTGTTGATCTCTTTCAATGACCCCCTGAATAGCTTATACTGTGTACATTTCAATGGCTGGACTAAGTAGTCCATAGCTTCAGATCTCAAAGCCATGTGGGTCTTTCTGGTCATACTTTCCCAAACTGAGGTTTGACATTGAGGGCTAAATTAGGTTCAGAGTAATGCTCCTTTAGACACTCATTTCCTTCTGGCTTCCATTAGTGTCCCTGTTGCACTCTGGCATGGCGAGGCTAGAGGCTTGTAGGGCAGTTTCACCATTCGTTGTTTTGCATAGCATTTCAGTTAAAGTAGACACTGCTACAGAAATACATCAAACAATAAAGCTGAAAATGAGTCAGTATTATGTCACCCACAGAAGGACTCCCATGAGGGATGAGCCTGTTTTTCTTTTGGTGCTGTTGTGGGACATAGCTGGATATGATGAGTATGTGGAGGATTTACATTGTCTGTCTGGAGGAGCCCCTACACTTTCTGTCTGGAGGAGCCCCTACACATTGTCTGTCTGGAGGAGCCCCTACACTTTGTCTGTCTGGAGGAGCCCCTACACTTTGTCTGTCTGGAGGAGCCCCTACACTTTGTCCAGTTGGGTTTGAGTTATTTTGATATTCTTGGGCTTTCATTTCTCTTCCCTCGTGTGATTTAAGAAGCTGTCCACCACGTAGTTCCCCATAGGAGGCATCCCTGCAATGGCCCAGGAATCCGGTGTAAATGCAAGTGTTTCTGAGCGTGTGTGTCAGAGGGAAACTGGTGCCAAGCAGTTCTTATACAGGTCTTTAACAAAGCAGTGGAGTCTGCTGagagacggctcataataatggcccgACCagcgcaaatggaatggcatcaaatacatggaaaccatgtgtttaatcTATTTGATACTATTCCCGCTCCAGctattaccatgagcccgtcctccccaattaagttgccaccaacctcctgtgtaatAAAGGGATAACTAATGTGCTTTTGATTTGTTTTCCTCCTTTACAGTTATCTTTAACAAGCACTTTCATCCTTCTCATGTATCGTCGGTCGCAGAGGACTTTGTAGCCGTTTCCTGTAACAGGACATAGCAGTTTCTTGTAACAACAAGTGCTCTTTTTGTTTAgtatgtttatttttgttttgttgaatttACTTTAAAGAGCATTACATTGATGTAGAAATAAAGGAAAATAAAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU552717 lncRNA upstream 134104 23062736 ~ 23064014 (+) True G486312
TU552722 lncRNA upstream 135766 23060989 ~ 23062352 (+) True G486313
TU552643 lncRNA upstream 244168 22952653 ~ 22953950 (+) True G486246
TU552531 lncRNA upstream 421043 22776022 ~ 22777075 (+) True LOC110525516
TU552521 lncRNA upstream 446994 22750913 ~ 22751124 (+) True G486159
TU552825 lncRNA downstream 25784 23251570 ~ 23252499 (+) False G486411
TU552827 lncRNA downstream 25784 23251570 ~ 23260565 (+) False G486411
TU552829 lncRNA downstream 29086 23254872 ~ 23255501 (+) True G486411
TU552557 lncRNA downstream 81631 23307417 ~ 23313220 (+) True LOC110525581
TU552918 lncRNA downstream 124911 23350697 ~ 23351177 (+) True G486492
XM_036979641.1 mRNA upstream 604 23079630 ~ 23197514 (+) False LOC110525518
XM_036979642.1 mRNA upstream 604 23079630 ~ 23197514 (+) False LOC110525518
XM_036979646.1 mRNA upstream 604 23079630 ~ 23197514 (+) False LOC110525518
XM_036979644.1 mRNA upstream 604 23079631 ~ 23197514 (+) False LOC110525518
XM_036979645.1 mRNA upstream 604 23079631 ~ 23197514 (+) False LOC110525518
XM_036979660.1 mRNA downstream 79795 23305581 ~ 23308291 (+) False LOC110525581
XM_036979663.1 mRNA downstream 86255 23312041 ~ 23313066 (+) False LOC118964855
XM_036979662.1 mRNA downstream 86255 23312041 ~ 23320121 (+) True LOC118964855
XR_005052039.1 mRNA downstream 133291 23359077 ~ 23389892 (+) False LOC110525161
XM_036979665.1 mRNA downstream 133291 23359077 ~ 23392808 (+) False LOC110525161
TU552742 other upstream 6201 23190632 ~ 23191917 (+) True LOC110525518
TU552480 other upstream 523666 22674242 ~ 22674452 (+) True G486127
TU552088 other upstream 753499 22441316 ~ 22444619 (+) True G485780
TU550899 other upstream 1644021 21553732 ~ 21554097 (+) True G484726
TU550839 other upstream 1731213 21464139 ~ 21466905 (+) True G484674
TU553562 other downstream 302954 23528740 ~ 23531799 (+) True G487078
TU553637 other downstream 427334 23653120 ~ 23667927 (+) False G487146
TU553786 other downstream 686035 23911821 ~ 23914250 (+) True LOC110525563
TU554703 other downstream 1354175 24579961 ~ 24586313 (+) True G488049
TU554735 other downstream 1405183 24630969 ~ 24631396 (+) True G488078

Expression Profile