RNA id: TU552812


Basic Information

Item Value
RNA id TU552812
length 1482
lncRNA type read_through
GC content 0.36
exon number 2
gene id LOC110525520
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23181353 ~ 23227167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacgcagaaTGCTCTTTTTGTTTAgtatgtttatttttgttttgttgaatttACTTTAAAGAGCATTACATTGATGTAGAAATAAAGGAAAATAAAGTGGGCTATTTCCATGTGTTATTTGCTAGCCGGAATAGTTTCTCATGCAAAATGAAAATATGTAAGATGTATGGTACATATCTTGACACATTGCCAGGGTAGGTCAATCATCTTTAATGTATGTACAAAAACCTTTTAGTTGTCTTGCAACAATGTATACTTATTGAATACAAATTCATGTGACTACATGACAGAAACACAAAGCAAAAATCAAGGTAAAAAAAGCAACTGCTGCTCTAAATGACTCATGCTCTTCTGATGTGACAAATATCATATTTTATCAATTGAAAAAGAAGCGATTAATAGTGACGAACCCTGACGATTACTGGACTTCATAGTTAGTTCACTGCACAGAAGTAAGAACAGGACATCTGTACCATAATAAGCAGCTCCACTGCCTGCTGGTTCAAATCAAAGACTAAGTTTATAGGCGTCTTATTCTTCTTAGGCTACAAGTGTTCCTTGTATTAAATATACTTAACATTTATTTTGTCCATTAGTATGGTAAGACTAACTGTTATTAAACAATCATATGCGATTAGATATCAAAGTCCATTTAATCAAAAAGAAGACTGGTCATGTAGAAACAATGAATTTGGAATCCTGCACagttagggctctattcagtctTTAAAGCTGAAGTGTTATAGATTCCatgatagaaatgtaaaggtcatttcagATTGAGCCGACATGcagtgtttaccgtgaatgcagtctccgctaaacCACTAACATTGCTTataaatttcaatcacgctgtaaagcTGAATTTCTGCGATGCAGATTGACTAGAGCCCTTAATCTCAAGTACAAAGTGAAAAGCTCATGAGTATTGCCTTCTCGGAACCCATATTATTTGTACAGTACATGGGTGATTAAATGTTGGCATGATTGACCGTCCAGAGAAAAGCAAAAATTACAGTATTGCATCTGGGATGATGATGAGATTTTGAGATGAGATTTCTCTCCCTGCAACATCATTAGAAATACGTCCTTAAAAAATATAGACTTGGCTGTACCAGCCTACTATTCCCTTTTGCTATAAAAACTGGAACAATATTTACAACTTTGATTTTAGTACTTATAAAGGTTCATATCCTCGACCCATTAGATCCACAGGGGTTCCCTGCTAATGCTGCTCTGTTGAACAACTATCTGCCATAGGACCATAGCAATGAATACACATATAAGAAAAGACAAGATTGTCAAAGGACATTTCCCCAGTGCAATAGTGTGTTGGCATATGAATCCAGATTGCACTATATACAGGCGATGGGTTTTCTGGTTTGTCACCCTTAGATGGTGTAGCCATGTGGACAGAGGATCACACAGCTCCTCTCTCCTAAACCTCTCCTTGTGTTACTCACACAGATGACTGGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU552717 lncRNA upstream 117339 23062736 ~ 23064014 (+) True G486312
TU552722 lncRNA upstream 119001 23060989 ~ 23062352 (+) True G486313
TU552643 lncRNA upstream 227403 22952653 ~ 22953950 (+) True G486246
TU552531 lncRNA upstream 404278 22776022 ~ 22777075 (+) True LOC110525516
TU552521 lncRNA upstream 430229 22750913 ~ 22751124 (+) True G486159
TU552825 lncRNA downstream 24403 23251570 ~ 23252499 (+) False G486411
TU552827 lncRNA downstream 24403 23251570 ~ 23260565 (+) False G486411
TU552829 lncRNA downstream 27705 23254872 ~ 23255501 (+) True G486411
TU552557 lncRNA downstream 80250 23307417 ~ 23313220 (+) True LOC110525581
TU552918 lncRNA downstream 123530 23350697 ~ 23351177 (+) True G486492
XM_021605722.2 mRNA upstream 174041 23002738 ~ 23007312 (+) True LOC110525533
XM_036979654.1 mRNA upstream 189168 22960885 ~ 22992185 (+) False LOC110525525
XM_036979655.1 mRNA upstream 189168 22960885 ~ 22992185 (+) False LOC110525525
XM_036979656.1 mRNA upstream 189168 22960887 ~ 22992185 (+) True LOC110525525
XM_021605709.2 mRNA upstream 224264 22935408 ~ 22957089 (+) False ift81
XM_036979660.1 mRNA downstream 78414 23305581 ~ 23308291 (+) False LOC110525581
XM_036979663.1 mRNA downstream 84874 23312041 ~ 23313066 (+) False LOC118964855
XM_036979662.1 mRNA downstream 84874 23312041 ~ 23320121 (+) True LOC118964855
XR_005052039.1 mRNA downstream 131910 23359077 ~ 23389892 (+) False LOC110525161
XM_036979665.1 mRNA downstream 131910 23359077 ~ 23392808 (+) False LOC110525161
TU552480 other upstream 506901 22674242 ~ 22674452 (+) True G486127
TU552088 other upstream 736734 22441316 ~ 22444619 (+) True G485780
TU550899 other upstream 1627256 21553732 ~ 21554097 (+) True G484726
TU550839 other upstream 1714448 21464139 ~ 21466905 (+) True G484674
TU549738 other upstream 2218027 20958755 ~ 20963326 (+) True LOC110525116
TU553562 other downstream 301573 23528740 ~ 23531799 (+) True G487078
TU553637 other downstream 425953 23653120 ~ 23667927 (+) False G487146
TU553786 other downstream 684654 23911821 ~ 23914250 (+) True LOC110525563
TU554703 other downstream 1352794 24579961 ~ 24586313 (+) True G488049
TU554735 other downstream 1403802 24630969 ~ 24631396 (+) True G488078

Expression Profile