RNA id: XM_036979660.1


Basic Information

Item Value
RNA id XM_036979660.1
length 2257
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110525581
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23305581 ~ 23313220 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttggtttgttgatggtgtcctatcaaagctcgatgactatactatttcccagtcaccctcacccaatgaagacttgagcgtgagtactcaatattctcaactgagctcagaagagagtgtcagaatCACAGAGTCCTCTACTAGTCTGATTCAGAGCATTAAGAAGCTCTCTAGCAATGACTTCCAGACTCAGGCAGAAGAGGCAGTGAGTAAAGTGCTGATGAGATCCAGTCATTCCTTTATCACACAGATCAGCCATACTGGTCTTCAGAAAAGTCTGCAGGCTGGCTTATCATCTAGCTCACCATCAGAGATCCATGTTCTTTCAGAATCCATGTCCTCTATGTCCTCTGAGAATACAGCCTCTGGATTAGTGGAAACCTTTGTCAACGGAATGGCGACTATTTTCCAGAAAAATGAGTCCACTGACACTGTGCTACTGGAAAGAAGTGGGAGAGGTTCGCAGTGCTCCCACGGGGGCTCCCAACTGGATGATACTGAATTGAGTGTTAAAATATCAGAGGAGAAGCTTTGGTCAACAGCTAAGACCATCTGCGTCAGTATGAAGAACACACTTAAGGATTTCTTCACAGGGCTGAAGCCACCCGGATCCGAAAGGACAGAAAATGCTTCTTCCAAAGAGACCCTTGGGGAAATCCTGGTTGCTATCCAGAGTGAAATCTCAAACTTAGGGCGAATGAAGGATTCCAGGGAGCTCCTTCAGATCAATGATATGGTAGGAACTATGCTTAAGGAGGttgagaaaagtgaggatgacAGTGAACAAGTCTGCCAAGACATCCCTAGAACCTGTTCATCTTTGTCCACTTGTTTAAATGGTCGTAGTTCCTTGTCCAGCTCTTCAAAGAGTCCTAGGTCAGAGTGTGAGTTAGAGATCaacctccctggcactcccatcccTGACGAAGTGCCTTTCGATCTGACCTGCCCCATCGTCAGGAGCTCCTTCATCGACACCAGGGTCTCTAAAATGCCAGATATTTCTTCAAGTGACCTAAAGACAAAGATGATGGCACACACAGATGAACGATCCTCCACTCCTTCTTTCACCAGCAAGGGAACCTCTTTGGTACCAAAGGGAGATGGGATTGACATTGAAGAGAAGGAAGAGTGTATCCCCAGCAGCTCTGGCCATCTGAGGGAGCTCTTAATCACCCCGGACATCAGCAGTGCCACTgcattcccactgcagtacttgatGGACTCCAGCAAAGATGATGTTATCTGTTTGGTCACCATACTGGTGATAAGGTTGCTATCGGAGATCAGACCCTCAGCCCTAGATGAACCCTCCCAACAGGCAGCAGATCTGACAGAAACATCTCAGCAACTCATCAGACAagtcctgtctgagttctgtgctgCATCCAGATTCTCCAGGACAAAGGCATATTCCCAGAACCTGAACATCCAAAGGGTGTTCAGAGGTGTACATAAAAACCTCATGGAGGAGTTTGGCTCTTATAACACCCTGCAAGCAGCTATTTCCTCCCAGGACCCTGCATTTGACAGAGTCCTGGTAAAGtccttgacccagcagctggtacagggatgcaaggaggcgtcaagaccagcttctgctgcaacaaacccatcagaccaggctgagacagagaggggggctgagcagaaagcaagaaggagcttcctttgcttttcaatgaccaaactcaggatcaacttcaagCGTTCCAAGAGAGGAAACAAAAAGGACTGCCATTCAGTCCAGGAACAGACTGAGATTCCCTCTACTGATGGACATTGCATAGctccagttggagaggtttctccctccatatctcagccTGTCAAAAAACAATCCTTGATTGTCAGGGTCTTTTCAGCAATGATGAAGCCATTCAGGCGCTTCACCAAGAAGAACCTGTAACCTCTTAAGCTGCATGAAGATCTGCTTTTGTAACAGCAAGACTTTTGAAAAGAGGAATTTCTGCATGTCTACCCTTTCaaagtctatttgatcaaataaatgcaaattattttacaagaatttcaagtgttttggaagattAGTAAAACTGAAGCAGCTTTTCTCAGAGAAATGCACTAGTTCTCCCTTGGTTACACATTTATTGTGCAGTTTTTGAGTTGGCAGgacttggggcagcaggtagccttgtggttagagcgttgggccagtaactgaaaggttgctaggtcagatccctgagctaaccatgtaaaaatatgacgttctgctcctgaacaaggtagttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU552827 lncRNA upstream 45016 23251570 ~ 23260565 (+) False G486411
TU552829 lncRNA upstream 50080 23254872 ~ 23255501 (+) True G486411
TU552825 lncRNA upstream 53082 23251570 ~ 23252499 (+) False G486411
TU552812 lncRNA upstream 78414 23181353 ~ 23227167 (+) True LOC110525520
TU552717 lncRNA upstream 241567 23062736 ~ 23064014 (+) True G486312
TU552918 lncRNA downstream 42406 23350697 ~ 23351177 (+) True G486492
TU552919 lncRNA downstream 43080 23351371 ~ 23351732 (+) True G486493
TU552923 lncRNA downstream 48576 23356867 ~ 23357387 (+) True G486497
TU552925 lncRNA downstream 56243 23364534 ~ 23364761 (+) True G486499
TU552931 lncRNA downstream 75261 23383552 ~ 23383766 (+) True G486504
XM_021605696.2 mRNA upstream 79795 23198118 ~ 23225786 (+) False LOC110525520
XM_021605699.2 mRNA upstream 79795 23198118 ~ 23225786 (+) False LOC110525520
XM_021605700.2 mRNA upstream 79795 23198118 ~ 23225786 (+) False LOC110525520
XM_036979647.1 mRNA upstream 79795 23198118 ~ 23225786 (+) False LOC110525520
XM_021605698.2 mRNA upstream 79795 23198119 ~ 23225786 (+) False LOC110525520
XM_036979663.1 mRNA downstream 3750 23312041 ~ 23313066 (+) False LOC118964855
XM_036979662.1 mRNA downstream 3750 23312041 ~ 23320121 (+) True LOC118964855
XR_005052039.1 mRNA downstream 50786 23359077 ~ 23389892 (+) False LOC110525161
XM_036979665.1 mRNA downstream 50786 23359077 ~ 23392808 (+) False LOC110525161
XM_036979666.1 mRNA downstream 50786 23359077 ~ 23392808 (+) False LOC110525161
TU552742 other upstream 113664 23190632 ~ 23191917 (+) True LOC110525518
TU552480 other upstream 631129 22674242 ~ 22674452 (+) True G486127
TU552088 other upstream 860962 22441316 ~ 22444619 (+) True G485780
TU550899 other upstream 1751484 21553732 ~ 21554097 (+) True G484726
TU550839 other upstream 1838676 21464139 ~ 21466905 (+) True G484674
TU553562 other downstream 220449 23528740 ~ 23531799 (+) True G487078
TU553637 other downstream 344829 23653120 ~ 23667927 (+) False G487146
TU553786 other downstream 603530 23911821 ~ 23914250 (+) True LOC110525563
TU554703 other downstream 1271670 24579961 ~ 24586313 (+) True G488049
TU554735 other downstream 1322678 24630969 ~ 24631396 (+) True G488078

Expression Profile