RNA id: XM_036979663.1



Basic Information


Item Value
RNA id XM_036979663.1
length 840
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC118964855
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23312041 ~ 23320121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAGATGATGGCACACACAGATGAACGATCCTCCACTCCTTCTTTCACCAGCAAGGGAACCTCTTTGGTACCAAAGGGAGATGGGATTGACATTGAAGAGAAGGAAGAGTGTATCCCCAGCAGCTCTGGCCATCTGAGGGAGCTCTTAATCACCCCGGACATCAGCAGTGCCACTgcattcccactgcagtacttgatGGACTCCAGCAAAGATGATGTTATCTGTTTGGTCACCATACTGGTGATAAGGTTGCTATCGGAGATCAGACCCTCAGCCCTAGATGAACCCTCCCAACAGGCAGCAGATCTGACAGAAACATCTCAGCAACTCATCAGACAagtcctgtctgagttctgtgctgCATCCAGATTCTCCAGGACAAAGGCATATTCCCAGAACCTGAACATCCAAAGGGTGTTCAGAGGTGTACATAAAAACATCATGGAGGAGTTTGGCTCTTATAACACCCTGCAAGCAGCTATTTCCTCCCAGGACCCTGCATTTGACAGAGTCCTGGTAAAGtccttgacccagcagctggtacagggatgcaaggaggcgtcaggaccagcttctgctgcaacaaacccatcagaccaggctgagacagagaggggggttgAGCAGAAAGCAAGAAGGAGCTTCCTTTGCTTTTCAATGACCAAACTCAGGATCAACTTCAAGCATTCCAAGAGAGGAAACAAAAAGGACTGCCTTTCAGTCCAGGAACAGACTGAGATTCCCTCTACTGATGGACATTGCATAGGTAAGGATTTTAGAGCTCTGCTAAAGCTTGTAgttttgtttaggtgtgtgttagaaacataggtatgcctacca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU552827 lncRNA upstream 51476 23251570 ~ 23260565 (+) False G486411
TU552829 lncRNA upstream 56540 23254872 ~ 23255501 (+) True G486411
TU552825 lncRNA upstream 59542 23251570 ~ 23252499 (+) False G486411
TU552812 lncRNA upstream 84874 23181353 ~ 23227167 (+) True LOC110525520
TU552717 lncRNA upstream 248027 23062736 ~ 23064014 (+) True G486312
TU552918 lncRNA downstream 37631 23350697 ~ 23351177 (+) True G486492
TU552919 lncRNA downstream 38305 23351371 ~ 23351732 (+) True G486493
TU552923 lncRNA downstream 43801 23356867 ~ 23357387 (+) True G486497
TU552925 lncRNA downstream 51468 23364534 ~ 23364761 (+) True G486499
TU552931 lncRNA downstream 70486 23383552 ~ 23383766 (+) True G486504
XM_036979660.1 mRNA upstream 3750 23305581 ~ 23308291 (+) False LOC110525581
XM_021605696.2 mRNA upstream 86255 23198118 ~ 23225786 (+) False LOC110525520
XM_021605699.2 mRNA upstream 86255 23198118 ~ 23225786 (+) False LOC110525520
XM_021605700.2 mRNA upstream 86255 23198118 ~ 23225786 (+) False LOC110525520
XM_036979647.1 mRNA upstream 86255 23198118 ~ 23225786 (+) False LOC110525520
XR_005052039.1 mRNA downstream 46011 23359077 ~ 23389892 (+) False LOC110525161
XM_036979665.1 mRNA downstream 46011 23359077 ~ 23392808 (+) False LOC110525161
XM_036979666.1 mRNA downstream 46011 23359077 ~ 23392808 (+) False LOC110525161
XR_002473769.2 mRNA downstream 247832 23560898 ~ 23570652 (+) True LOC110525542
XM_021605740.2 mRNA downstream 283146 23596212 ~ 23606381 (+) False asgrl1
TU552742 other upstream 120124 23190632 ~ 23191917 (+) True LOC110525518
TU552480 other upstream 637589 22674242 ~ 22674452 (+) True G486127
TU552088 other upstream 867422 22441316 ~ 22444619 (+) True G485780
TU550899 other upstream 1757944 21553732 ~ 21554097 (+) True G484726
TU550839 other upstream 1845136 21464139 ~ 21466905 (+) True G484674
TU553562 other downstream 215674 23528740 ~ 23531799 (+) True G487078
TU553637 other downstream 340054 23653120 ~ 23667927 (+) False G487146
TU553786 other downstream 598755 23911821 ~ 23914250 (+) True LOC110525563
TU554703 other downstream 1266895 24579961 ~ 24586313 (+) True G488049
TU554735 other downstream 1317903 24630969 ~ 24631396 (+) True G488078

Expression Profile