RNA id: XM_021605740.2



Basic Information


Item Value
RNA id XM_021605740.2
length 1045
RNA type mRNA
GC content 0.44
exon number 8
gene id asgrl1
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23596212 ~ 23606381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caaacacaactTTGAACTTTTGGTCAAATACCAGAAGAAGACTGGACAGACTGATAGATCAGCTGAGAGGTGTTCACATTTCCATGAACATAACAGGAGTGAGAAATGGATTCCATTCAGTATGATCAATTTGGTACGTCTGACATTGAAAGTAACCACAGTCGGAGGAAAATCATCCCACAAAGAGGTATGCAGAGCAGGGTGGTTCATCTCCTGTATGGTGTCTTGGTGCTTCTCCTGTTGATACTACTGCTGATAACTGGACTTAAATTCTCTCAGTTAAACCAAGCGATAGTTGATGTCCATCTTTACCTTGAGTCCCTGAACAAGACTGTGATAAGTGCTTGTGCCACATCTTCCAGTTCAGACCCAGCTACTATCAACCATAACTATCATGATGAATTTCAGCTTCCAGTGATAGGAACTTGTAATGAAGAATGGTGGTCCTTCCAGGATAGCTGCTACCTGGCATCAAAAAGGAAGCTCAACTGGAAAAGTGCAGAGGAAAAATGTATTGAGCTGGGAGCACACCTGCTTGTTCTTAACAGTGAGGATGAGCTGGACTACATCTCTCAAATGATTGATGCAGGAAAGAGATACTGGGTTGGGCTTGTGGAGAGAGCACAAGAGGGCCACTGGACCTGGGTGGATGGAACTGACTACAAATCAACTCCACACTTCTGGGATAAAGGGCAGCCAGACGACTGGCAGGTTGGTGTGATTGGAGAGGACTGTGGACAGCTTCATGACGGTCCACACAGACAACGCAAGCTTTGGAATGATGCAGACTGCAGCCTAATGTACAATTACATCTGTGAGGCAAAGGGGAAATGAGAAACAGTAGACCCATGCTTGCCATTGACACATGAGCTGTAAGCTATGCCTGTGCTGCCCGACTGATATAACATGACAGTCTCAGGATACAGGAGAAAGGATGGATTTCTTTCAGTGACTGTACAACAATCACAAATAATGGTATTGAGCATAAGAAGCACACAGTGTATAACGTGAGCTTATTCACAGAATAAAGTTTAATTAAACCTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU553615 lncRNA upstream 2562 23593389 ~ 23593650 (+) True G487125
TU553614 lncRNA upstream 3079 23592866 ~ 23593133 (+) True G487124
TU553612 lncRNA upstream 4948 23591011 ~ 23591264 (+) True G487122
TU553596 lncRNA upstream 16979 23579024 ~ 23579233 (+) True G487109
TU553593 lncRNA upstream 20502 23575451 ~ 23575710 (+) True G487106
TU553634 lncRNA downstream 37521 23643902 ~ 23644111 (+) True G487144
TU553639 lncRNA downstream 48637 23655018 ~ 23662756 (+) True G487146
TU553648 lncRNA downstream 62681 23669062 ~ 23669278 (+) True G487153
TU553604 lncRNA downstream 97958 23704339 ~ 23704700 (+) True G487116
TU553602 lncRNA downstream 99168 23705549 ~ 23707548 (+) True G487114
XR_002473769.2 mRNA upstream 25560 23560898 ~ 23570652 (+) True LOC110525542
XM_036979665.1 mRNA upstream 203404 23359077 ~ 23392808 (+) False LOC110525161
XM_036979666.1 mRNA upstream 203404 23359077 ~ 23392808 (+) False LOC110525161
XR_005052039.1 mRNA upstream 206320 23359077 ~ 23389892 (+) False LOC110525161
XM_036979662.1 mRNA upstream 276091 23312041 ~ 23320121 (+) True LOC118964855
XM_021605744.2 mRNA downstream 2292 23608673 ~ 23609827 (+) True LOC110525547
XM_021605757.2 mRNA downstream 71093 23677474 ~ 23703291 (+) True LOC110525549
XM_021605770.2 mRNA downstream 185063 23791444 ~ 23801151 (+) True ggt5a
XM_021605772.2 mRNA downstream 235094 23841475 ~ 23847341 (+) True LOC110525559
XR_005052046.1 mRNA downstream 251473 23857854 ~ 23884024 (+) False LOC110525560
TU553562 other upstream 64413 23528740 ~ 23531799 (+) True G487078
TU552742 other upstream 404295 23190632 ~ 23191917 (+) True LOC110525518
TU552480 other upstream 921760 22674242 ~ 22674452 (+) True G486127
TU552088 other upstream 1151593 22441316 ~ 22444619 (+) True G485780
TU550899 other upstream 2042115 21553732 ~ 21554097 (+) True G484726
TU553637 other downstream 46739 23653120 ~ 23667927 (+) False G487146
TU553786 other downstream 305440 23911821 ~ 23914250 (+) True LOC110525563
TU554703 other downstream 973580 24579961 ~ 24586313 (+) True G488049
TU554735 other downstream 1024588 24630969 ~ 24631396 (+) True G488078
TU554945 other downstream 1332388 24938769 ~ 24939272 (+) True G488258

Expression Profile