RNA id: XM_036979152.1



Basic Information


Item Value
RNA id XM_036979152.1
length 956
RNA type mRNA
GC content 0.50
exon number 8
gene id aakb1
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23614867 ~ 23617686 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCATAGGTGGTATATATATGGTTGTTGCTGAGTCAGAATGGGAAACAACAGCAGCAGTGGTGAGCGGGCCAGTGCAGGTCAGGGTGAGAGGCCCTATCAGCGTGACGATGGACAAGGTGCCAAGGATGGAGCACGGCCCAAGATTATCATGGACAGCACAGATGATGCTGACCTGTTTAACACCAGAGAGGCTAAAAATGCTCCTCAGGAGATTCAGGAGTTTCTAGCCTGGCAGCGGGACCTTGAGAGTGACAGTAAATGTCCCAGTCAGGCCAAGCCCACTGTGTTCCGTTGGACAGGCGCTGGCAAAGAGATCTTTGTGTCTGGATCATTCAACAACTGGGCCACCAAGATTCCCCTCAACAAAAGCCAGAACAACTTTGCAGCGGTTGTGGACTTGCCTGAGGGAGAACACCAGTACAAATTCTGTGTAGATGGACAGTGGACCCTCGACCCGACAGGGGCTGTGTTGACGACCAAAACTGGCACGGTCAATAATGTCATTCAGGTGAAGAGGACTGACTTTGAGGTGTTTGATGCCCTCATGATTGATTCTCAGGAATGTGCAGACATGTCAGACCTCTCGAGTTCCCCTCCGGGACCCTACCAGCAGGACCCATACATAACCAAGACGAGCGACAAGCTCAAGAACCCCCCCATCCTGCCACCACACTTGCTGCAAGTCCTACTCAATAAGGACACTGGCGTGTCTTGTGACCCAGCCCTTCTTCCAGAGCCCAACCATGTGATGCTCAACCACCTCTATGCCCTCTCCATCAAGGATGGGGTGATGGTTCTTAGCGCAACTCACCGCTACAAAAAGAAGTATGTGACCACACTTCTGTACAAGCCGATCTAATCATGCCATCATGTGCGTCCTGCCTAGAAACGTTTCAAATCTATTCTTGTATAATTCTGTTTTTTATATCGATGATTAAACTTCTCTCTATCTCAGA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU554045 lncRNA downstream 19884 23594705 ~ 23594983 (-) True G487504
TU554044 lncRNA downstream 20713 23593953 ~ 23594154 (-) True G487503
TU554042 lncRNA downstream 23810 23590664 ~ 23591057 (-) True G487501
TU554037 lncRNA downstream 29313 23582929 ~ 23585554 (-) False LOC110525180
TU554028 lncRNA downstream 40232 23574387 ~ 23574635 (-) True G487495
TU554093 lncRNA upstream 56500 23673929 ~ 23674146 (-) True G487529
TU554106 lncRNA upstream 79789 23697218 ~ 23699515 (-) True G487538
TU554119 lncRNA upstream 86105 23703534 ~ 23704259 (-) True G487546
TU554118 lncRNA upstream 90589 23708018 ~ 23710130 (-) True LOC110525551
TU554113 lncRNA upstream 100957 23718386 ~ 23720835 (-) True LOC110525553
XM_021605743.2 mRNA downstream 7041 23606349 ~ 23607826 (-) True pla2g1b
XM_021605738.2 mRNA downstream 24515 23588230 ~ 23590352 (-) True LOC110525543
LOC110525180 mRNA downstream 26975 23582127 ~ 23587892 (-) False LOC110525180
XM_021605737.2 mRNA downstream 54065 23550291 ~ 23560802 (-) True LOC110525541
XM_036979673.1 mRNA downstream 64714 23510610 ~ 23550153 (-) True si:ch73-138n13.1
XM_036981822.1 mRNA upstream 5378 23622807 ~ 23643348 (-) True LOC118965070
XM_021605745.2 mRNA upstream 27566 23644995 ~ 23668368 (-) False LOC110525548
XM_021605746.2 mRNA upstream 27566 23644995 ~ 23668368 (-) False LOC110525548
XM_021605748.2 mRNA upstream 27566 23644995 ~ 23668368 (-) False LOC110525548
XM_021605749.2 mRNA upstream 27566 23644995 ~ 23668368 (-) False LOC110525548
TU554033 other downstream 29313 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 29313 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 222805 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 228960 23385534 ~ 23385907 (-) True G487022
TU553428 other downstream 361506 23251286 ~ 23253361 (-) False G486953
TU554111 other upstream 96446 23713875 ~ 23717783 (-) True LOC110525552
TU555138 other upstream 736104 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 1043468 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 1089142 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 1488776 25106205 ~ 25106570 (-) True G489038

Expression Profile


XM_036979152.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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XM_036979152.1 Expression in each Bioproject

Bar chart with 10 bars.
XM_036979152.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.