RNA id: XM_036979694.1


Basic Information

Item Value
RNA id XM_036979694.1
length 1849
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC110525565
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23943886 ~ 23948503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTGGTATAAAATGTCTTCAAATCTCTATGCAGAGTCAAGCGTTCGATAACTATGATTTGTTTATGTAAATTATGATGCGACATGATTGTGTTACCTAAAGTGAGCATCACTGttattctctctatctttctctctgtctttctccctcgctcccactctcctcctcctcgaaGACCGGGGGCGTGGAAGTTCGAACTTGATTCTGAACGTTTAAACACTCGACTTTATTGTACCGATTTTCTTTTCAAGCAGTTGAAAGGCTAAGGGTACAGGATGACTACCTACATGGACAGAGGTGAAAAGCACGACCACGGCAAGTTCGTCTGTTTCGACCACATCACATTCTGGGTTGGAAATGCCAAACAGGCAGCATCTTACTATTGTAACAAGCTTGGATTTGAACCATTGGCCTATCAGGGTTTAGAGACAGGCTGCCGGGATGTGGTGTCCCATGTGGTCAAACAAGACAAGATTATTTATGTATTCGCATCCGCTCTCAATCCTGGAAACAAAGAAATGGGGGAGCATTTGGTCAAACATGGGGATGGAGCCAAGGACATTGCATTCACTGTGGAGAACTGTGATTACCTTGTGCAGAAAGCCAGAGAGCGTGGTGCCATCATAGTGAAAGAGCCCTATGTACTGGAGGACAAATATGGCAGGGTAAAACTAGCTGTTCTCCAGACGTATggggacaccacacacacatttgtgGAGAGGACTGCCTACAATGGGCTGTTCCTCCCAGGGTTCCATACTCCTCTCCACCGGGACCCCTTGTTGGCCAAGCTacccagtggattactgaacttCATTGACCATGTTGTGGGGAACCAGCCGGATGATGAGATGGTGCCTGTAGTGGAATGGTACCAGAAAAACCTGCTCTTCCACCGGTTCTGGTCAGTAGACGACAAGCAGCTGCAGACAGACTTCAGTGCACTGCGCTCCATTGTTGTGGCCAATTATGAAGAGACAGTGAAGATGCCCATTAATGAGCCAGCCATGGGTAAACGCAAGTCCCAGATCCAGGAGTATGTGGAGTACTATGGTGGCCCAGGTGTCCAGCACATCGCCATGAACACATCAGACATCATCACCGCAATCCGTAACCTGAAGGAGCGTGGCATGGAGTTCATGTGTGTGCCAGACACCTACTACCAGCTGCTGAGAAAGAATCTCCAACAATCGCAAGTCAGGGTCACTGAGGACCTGGACATTCTGGAGGAGCTGAAGATCTTAGTGGATTTTGATGACAATGGCTACCTGCTCCAGATCTTCACCAAGCCTGTTCAGGACCGTCCCACAGTGTTCCTGGAGGTCATTCAGAGACACAACCATCAGGGCTTTGGTGCAGGCAACTTCAAGGCTCTTTTCGAGGCCATCGAGGCAGACCAGAACGCTAGAGGGAACTTGACTATCCTGAAACCTAATGGAGTGTCTAACCAAATTTGAAGTACTGCTCTGATTTACACAATTTATATAATGTCCATCATCTCTGAAGCTTACATTTAATTTAGAACTATTGAAAATAATTTGTTCAACAATTTATATCTGAAGTGAACCAGAATCTAGTTAAATGACTTTGATGGATAAATTGCTGCTCTATGCACACACTATTCAAATTTAAATTATGATTGACATACCTTCTGGAGTCAAACGTAGGAATGATTGCTAATTATTCAAATAATATAGTGACGctaaaataacaaaaatatatttgactTGATGCCAATTTTAAATACAGtgatttcagaaagtattcataccccttgacttattccacattttgttgtgttacagcctgaattcaaaatggattaaaaaaatgtttttgtcacCCGtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554261 lncRNA downstream 14115 23929251 ~ 23929771 (-) True G487656
TU554260 lncRNA downstream 15762 23927892 ~ 23928124 (-) True G487655
TU554254 lncRNA downstream 28179 23914414 ~ 23915707 (-) True G487650
TU554255 lncRNA downstream 28711 23914366 ~ 23915175 (-) False G487650
TU554224 lncRNA downstream 80879 23857862 ~ 23863007 (-) True G487628
TU554280 lncRNA upstream 5638 23953876 ~ 23954168 (-) True G487670
TU554283 lncRNA upstream 9336 23957574 ~ 23957782 (-) True G487673
TU554291 lncRNA upstream 20211 23968449 ~ 23968654 (-) True G487681
TU554318 lncRNA upstream 69507 24017745 ~ 24018026 (-) True G487708
TU554271 lncRNA upstream 71334 24019572 ~ 24023100 (-) False G487662
LOC110525564 mRNA downstream 25822 23915796 ~ 23918064 (-) True LOC110525564
XM_036979689.1 mRNA downstream 32147 23888654 ~ 23911739 (-) False LOC110525561
XM_036979690.1 mRNA downstream 32147 23888654 ~ 23911739 (-) False LOC110525561
XM_036979691.1 mRNA downstream 32147 23888654 ~ 23911739 (-) True LOC110525561
XM_021605778.2 mRNA downstream 49205 23888654 ~ 23894681 (-) False LOC110525561
XM_021605782.2 mRNA upstream 21850 23970088 ~ 23972273 (-) True LOC110525566
XM_021605785.2 mRNA upstream 76308 24024546 ~ 24031999 (-) True LOC110525568
XM_021605783.2 mRNA upstream 83831 24032069 ~ 24041920 (-) False LOC110525567
XM_021605784.2 mRNA upstream 83831 24032069 ~ 24041920 (-) True LOC110525567
XM_021605788.2 mRNA upstream 111673 24059911 ~ 24071705 (-) True LOC110525572
TU554111 other downstream 226103 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 358332 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 358332 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 551824 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 557979 23385534 ~ 23385907 (-) True G487022
TU555138 other upstream 405295 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 712659 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 758333 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 1157967 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 1548725 25496963 ~ 25497489 (-) True G489511

Expression Profile