RNA id: TU555289


Basic Information

Item Value
RNA id TU555289
length 891
RNA type TUCP
GC content 0.54
exon number 4
gene id LOC110525585
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24655788 ~ 24715090 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTCTCCGTCCTctacctgactgtctgtctcctgtatcTCCGTCCTCTACCTGACTGGCTGTCTCCTGTATCTCCGTCCTctacctgactgtctgtctcctgtatcTCTGTCCTCTACCTGACTGGCTGTCTCCTGTATCTCTGTCCTctacctgactgtctgtctcctgtgtctCCGTCCTctacctgactgtctgtctgctgtgtctccatcctcctcctgaTTGGCTGTCTCCTGTATCTTCGTCCTCTACCTGACTGGCTGTTTCCTGTGTCTCCGTCCTCTACCTGACTGGCTGTCTCCTGTGTCTCCGTCCTCTACCTGACTGACTGTCTCCTGTGTCACCGTCCTctacctgactgactggatggctgCCTGTCTATCTTCTGTCAGTTCAAAGGAGGGTGTTTGGTCCAATGAGGGCTGTGTGCGGTCCGGAGGGAACATGTCCTactcagtgtgtctgtgtaatcATCTCACCAACTTCGCCATCCTCATGCAGGTGGTGCCCATGGAGCTTTCCAAGACCCACCAGGTGGCGCTATCAACCATCAGTTACGTTGGCTGTGCCATCTCCATCTTTTGTCTGACCATCACTCTGGTGACGTTTGCAATCCTGTCGACAGTGAGCACTATCTGTAACCAACGCTACCACATCCATGCCAACCTGTCCTTTGCCATTCTGGTTGCCCAGATTCTGCTGCTCATCAGCTTCCGCTTTGATCCGGGCACGCTGCCCTGTAAGGTGATGGCTGTGCTGCTCCACTTCTTCTTCCTGAGTGTGTTTGCCTGGATGCTGGTGGAGGGCCTGCACCTCTACAGCATGGTCATCAAGGTTTTCGGCTCCGAGGGCAGCAAGCATTTCTACTACTACGGGATTGGCTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU555276 lncRNA downstream 16680 24643709 ~ 24644217 (-) True G488508
TU555275 lncRNA downstream 18118 24642217 ~ 24642779 (-) True G488507
TU555274 lncRNA downstream 18713 24641958 ~ 24642184 (-) True G488506
TU555273 lncRNA downstream 20142 24640525 ~ 24640755 (-) True G488505
TU555254 lncRNA downstream 64837 24592542 ~ 24596060 (-) True G488487
TU555301 lncRNA upstream 420 24675321 ~ 24675587 (-) True G488533
TU555311 lncRNA upstream 11185 24686086 ~ 24686286 (-) True G488543
TU555303 lncRNA upstream 25468 24700369 ~ 24700758 (-) True G488535
TU555287 lncRNA upstream 39546 24714447 ~ 24715051 (-) True LOC110525585
TU555342 lncRNA upstream 69961 24744862 ~ 24788105 (-) True G488574
XM_021605809.2 mRNA downstream 26539 24597970 ~ 24634358 (-) False ep400
XM_036979699.1 mRNA downstream 26539 24597970 ~ 24634358 (-) False ep400
XM_036979700.1 mRNA downstream 26539 24597970 ~ 24634358 (-) False ep400
XM_036979702.1 mRNA downstream 26539 24597970 ~ 24634358 (-) False ep400
XM_036979703.1 mRNA downstream 26539 24597970 ~ 24634358 (-) False ep400
XM_021605835.2 mRNA upstream 198322 24873223 ~ 24885005 (-) False piwil1
XM_021605836.2 mRNA upstream 198322 24873223 ~ 24885005 (-) True piwil1
XM_021605837.2 mRNA upstream 236726 24911627 ~ 24917852 (-) True LOC110525589
XM_021605839.2 mRNA upstream 497960 25172861 ~ 25375480 (-) False LOC110525591
XM_036979719.1 mRNA upstream 497960 25172861 ~ 25375482 (-) False LOC110525591
TU555138 other downstream 307074 24353533 ~ 24353823 (-) True G488386
TU554111 other downstream 943114 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 1075343 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 1075343 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 1268835 23390017 ~ 23392062 (-) True G487016
TU555288 other upstream 31670 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 431304 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 822062 25496963 ~ 25497489 (-) True G489511
TU557298 other upstream 1604806 26279707 ~ 26283169 (-) True LOC110525606
TU557449 other upstream 1780831 26455732 ~ 26457841 (-) True tmem230b

Expression Profile