RNA id: XM_036979719.1


Basic Information

Item Value
RNA id XM_036979719.1
length 5208
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110525591
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 25172861 ~ 25375482 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACACGCCCCCTAGACCAGTGTTTGCCAATACAAGTTGTGATTTGTGTTCAATTCCCTCTTATTTTTATACAAAGGATGTTGACGATGTGCATTATGCCAGGAGGATGGATTTAAGAGGGCGGAGTGTCAGGTCTTTATAGCTTGGGTATATCTGCAGCAGGGCACATGGATACAAGCGGATACAAATGCAAATAAGTATTTCATACTGCATAGTCAGCAGCCACATGGAGTGCCGAAGTTTGATAAAAAACGGATATAAAACAACAACTAACTGACCGCTATGTTGTACTGTATCCGACATGGAATTAATCTTTGTTCCCGCTGTAAATAACATGTATTGGAGTTAGCCGACGCGTGATTTGAAACATTTATTTTTCGACGGGTGACAGGACATCTGAAGAACTATATGAAAACACTTTCTTGTGCATTTCTATCACACCATGAGTCTTTTGCAGCCAAAGTATAATTGATTCTCAGTGAAATTCTTGAGGTTCGACGATAAGAGCTATTAAGCATCGCCAAGAAACTTCACATCGGTCTGCAAACGATGCAGAGGAGACAGGGATGACAAACCGGTGAAGACAGCGGATTTAAAATCCAGTAATATAATCCCTATGTAAAAATTGTATTTTTGTGACAACGGCTTCCATGGTGATTATTCATGATCCCATGTAGCAGAAGAAAACCAATAGGCTACTAATACTATTTTGTCGATAGGTAACGCTGAAGTCACCGTGCGTTATTCAGTTATCTGGAAAGCAATGTGCATGTAAACTGCAACTTTTAACAACTATTTTTATGACTTAATATTTACTACATATTGCCACGTTTTCATTTACATTCGATATTCAGAAATGGTCACCTTTTGCTGAAGGCTGTTCACATTGGATTATAGAAACGGGCATGACTTTTTGGAACTTAATAAACTATCCATTTGGATGGTCAGTGGACATTTGTAAAAAATCCTGAAGTCAGTTTTGATGCAGCCAAGTCCATGATTTGAATCCCTTTTGACTTATCCATTATCACTAAATCTAAATGGATTTTTTTCAAGAGGCGAACAGAAACATGTTGCATCTCCATGCGCTACAATCAATCATGGTACTTTTAGGGGTAGCAGACTGTCGAGTCTTGGAGGGATTGCAGAGGTTTTCGTCCATCCCCACCTACTTGCCTGTCAACTACCAGGTGGTCAACGCAGAGTCAGCCTTCTTCCTGAAGGAGGCCAACCAGGAGTTTATGAGGAACTCCAGCCTGCTGTCGCGGACAGAGCCCTTCTTCATTTATCAGGCCCGCAGCATGCCCTCAGTAAACGCCAGCTATGGACCCCTCTCTGTGGAGCAGCCTGTCCCCCCGGAGCTCATCCAGCACCCTGGAGCCTTTGTGGCGTCCTCCATGTTCACCTTCAACTGGAAGGTTCAGACCTTCATCATTCAGGAAAGGATCTACCTGGCCAAGCCCAGGGTCCAAGTGCTGTTCTATGTggccggcagggactgggacgACTACAGCGCCATCGACAAGCTGCCCTGCGTACGCATGTTTGCCTTCCATGAGACCCAGGAGGTGCGTGGCACCTGCCAGCTGAAGGGGGAACTGGGGCTGTGTGTAGCTGAGCTGGAGCCCCTGGCTGGCTGGTTCAGCCCCCCCAGCGTAGTGCCTGGGCGTCAAAGGACCATAGAGTTGGCCGAGGGAACCACCGTAGAGCTCTACTACATGTTACAGTCAACAGAGGAAGGGGAGTGCCACACGGAGGAGGCCCGGAAAGGCAACTCCATCCGCTCGAATCAGGAGGGTCTGTTCGGCTCATCCACCTCCACCCCCATGAGGAGGATCGGCAGTGTGCGTCTGTACCAGATCCCTGCCACTCCTTTCCTGACTGAACACAGGCTGGATAGTAACTTCCTGGTCATGGTGCCAGCCATGCCTATGAGGCAGAGGGACACTGTCTCTGCCTTCATCACTGCCTCAGCCTTCTCTCCTGTGGAAATGTTCACCCTAAGGGTCAAGTTGAAAGAGGGCATGGTGTTTCTGGGTGCCCGGCCCAGCAACCCCACCCTGTGGATGGTGAGCCAGGATGTGAGGAGCGAGGGGCACAGGGTGGTCACCCTCCGTTGCCGCAGGAAAGAGTCCAGCTACGGACAAAGGTCAGATGTGGGTTTCCAGAGGGTCCTACAGGTGGATCTGGAGGTGGACAGCTCCCTGGGTCCACTGGGCAGCCGCTGGATCACGTGGCAGGTTGAGTACCCGGGCAGCCATGCCACCATAcaggaggcagagacagagatccGGCTTGCCCAGAAAGACCTGGGGGgcattgtgcccctggctatggacacAGAGATCCTGAACACGGCCGTGTTGACAGGGAAGACTGTGGCTGTCCCGGTGAAGGTGGTGACCATCGGAGCAGACGGCACGGTCACTGACGTCTCAGAGGCAGTGGACTGTCGCTCCACAGATGAAGATGTGGTCAAGGTGTCAGACAGGTGTGACTATGTGTTTGTGAATGGGAAGGAGATGAAGGGCAAGGTGGGGATGATGGTGAACTTCACCTACAGCTACCTGAGTGCTCAGCTGGAGATGAACGTGTGGATCCCACGGCTGCCCCTCCAGATCGAGGTGTCTGACACAGAGCTCAGCCAGATCAAGGGGTGGAGGGTGCCCATCATGGCAAGCAGCCAAAGGTCTGCGCGGGAcagtgatgatgaggatgatgaagaCCGGAGAGTGAGGAGCTGCACGTTACAATACCAGAATGCCATGGTTCGAGTTTTGACACACTTTGTGGCCGAATCTACCAACCCACGTGGTCAGCCTGCCTTCATGCTAGGCAGTGATTGGCAGGTGGACATCACTGGGCTGGTGTGGGACTTCCTGAAGGTGGAGAACCCACAGATAGCTAAGCTTCAGGACAGACGTATACTGGTGGGACTGGACATGGGGATGACCACCATCCAGGCAGACGTGCCCTCATCTCCACACTCATCCATACCTGTCCCCTGGCTCCCGCCTCCCGTTAGGCTGGGCACAGAGGAAAACACCCTCCAGCCCAACAGTGGAAAACAGCACGAGATGAGACAAAACTGTGAAAAACGTTCTGTTTGTCTGTCACACCGACTACCTCACAGAGAGCTGGTGCTGTCCCCCCTGTCTGACTCCATTCTGGCAGAGAAGACTGTGACGGTGGTAGATGACAAAGTGACCATCACAGAACTGGGGGTGCAGCTGGTCACCGGCCTGGCTCTGTCCCTGCAGCTCAGCCCAGGAAGCAACCGGGCCATCCTCGCCACGGCAACCACACAGGAAGTGCTGCAGAGCCCCAAACAGgagGCCCTGATCAGCGCGTGGCTGCAGTTCAGTGACGGCTCCATGGCTCCTCTGGACATGTACAACCCAGACTACTTTGTCCTGACGGCCACGTCTCTGGATGAGGAGGTGGTGACGGTGCAGCAGGACCCCTCCTGGAAGTGGCCTGTGATCGTAACCGAGTCAGAGGGCCAGGGCCTGCTGGTCAGGGTGGAGATGACTGTCTGTGAGCTCTGCCAGAAGTTCAAACGCCGCAGCGTGCTGGCTGCAGGGAACTGCAATGTCAGGGTGAAGTTTGGCCAGAGCGACAGTGGCACCTCCAGGGGCAGTGACTACGGTCCAGAGGGAGAGGAGCTTGAGAACAGGGCCAGCGACCGCAGACAGCAGTCCCCCTCCCAGGACAGGACTGGTCTGGACGGCCACTACTACGGCAGCTCCATCTCTGACATGGACAACGGGGTCATGAGGAGGGTCACCACCACCACGAGTACCATCGTCAGGAGGCCCAATGGAGACAAGCTGTCAGACGATGGGAACCAGGTCCAGAACATGCCAGACTTCTCTGAATTCCCTGCTCATGTGGACCTCCCTCGCAGCCGCAACATGGACGATGATCTGATCCAGACAGCCCGGGGCCTCACTGACCTGGAGATTGGTATGTACGCCCTGCTGGGGGTCTTTTGCTTGGCCATCCTGGTCTTCCTCATCAACTGCATCTCCTACACCCTCAAGTACCGCCACAAGGAGCTGTCCATCGAGGGCCAGGAGAGCATGAACCACGCCCATGACTGGGTGTGGCTGGGGAACGAGGCGGAGCTGCTGGAGAGTCAAGTTAGTCTGTCCCCCCAGCAGGACGAGCTCACCTCCATGGTGGACTGCACCGCAGGGTTGGAAGAGGGTAGCCACCTGCTCAACGGGGCTTCTGTCCATAAGAACGTGCAGGGCCAGGTGCACCGGGCAGCAGACACGGGGGGCTGCACAGCCAAGGACAGCAAAGGAGACTCGCCGACCACAAAGAGGAAGCGTGTGAAGTTCACCACATTCACCACCATCCTGCCGGACAATGGTTGCCCCACTGTCAGCACACTGAGCATGGGCCACAGCCAGGACATTAAGTGGGTGTGTCAAGACGTAGAGCTAGGGGACTCCAAGGAGCCCTGGAACTACATGGAGAGGTTGAATGACAGTGCTTTAAAAGAGGTGGCGTAGTCTGTGTGCTCAGTGCACTTATAGCGAACTCACCCTTATGCCTTTCACAGTGAAGTTGGCCTGGACAGCACCTAATGCTAAACCCAGAGGAGGTTGAAATCTGGAAAATGTATTTAAGGGGACAAAATAGTAATGATACCACACAGGAATAATGGCAAATCATTAACTTGAAAGAAATTAGGatgtctgtttatttttttataatttgTTTCTCTCTTAATATCTTCCTACCTTTTTATCATTATTTCATTATGGTTATTTTGTAGGTAGACTTAAATCATGTTCCCAGACTAGCTCTGCATTATTGACAAATCTATGAAATGTTACGCAGATGATATGTAGATTTAAGAATGTAACATGAATAAATATTTAAGATGTATATAAAGTACTCGTAGAAAGGTTTTGGAAGTTTTGTAGCATTTTGAATATTGATTTCCTATTCCATGtcgttttttatttattcatttctttATAAGTGGCTGGCCTCCCAGAATAGACCAGAGTTAGTTTTCAGAACATCCTGCATGTGGTTTGAAATAAAGGCACAAATTTTAGGTTCATCCTCATCTTTACCAGAAGACACAGAGAAACGGCTATGTATATACTGAACAGTCCTCCTACAAGCCATTGTATTGTTGCTCTGTATATTGTATTTTCATATCTATCATTTAAAGAATATTCAACAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU555864 lncRNA downstream 5801 25166798 ~ 25167060 (-) True G489076
TU555858 lncRNA downstream 10777 25160464 ~ 25162084 (-) True G489070
TU555860 lncRNA downstream 23591 25149113 ~ 25149270 (-) True G489072
TU555857 lncRNA downstream 29203 25142449 ~ 25143658 (-) True G489069
TU555856 lncRNA downstream 30521 25141367 ~ 25142340 (-) True G489068
TU556029 lncRNA upstream 11278 25386760 ~ 25387111 (-) True G489237
TU556099 lncRNA upstream 27548 25403030 ~ 25403382 (-) True G489302
TU556104 lncRNA upstream 30564 25406046 ~ 25406667 (-) True G489307
TU556112 lncRNA upstream 41408 25416890 ~ 25417207 (-) True G489315
TU556113 lncRNA upstream 42529 25418011 ~ 25418217 (-) True G489316
XM_021605837.2 mRNA downstream 255009 24911627 ~ 24917852 (-) True LOC110525589
XM_021605835.2 mRNA downstream 287856 24873223 ~ 24885005 (-) False piwil1
XM_021605836.2 mRNA downstream 287856 24873223 ~ 24885005 (-) True piwil1
XM_036979705.1 mRNA downstream 457771 24655788 ~ 24715090 (-) False LOC110525585
XR_002473781.2 mRNA upstream 73537 25449019 ~ 25451212 (-) False LOC110525597
XM_021605858.2 mRNA upstream 267750 25643232 ~ 25660249 (-) True LOC110525601
XM_021605860.2 mRNA upstream 328692 25704174 ~ 25768791 (-) False lmx1bb
XM_021605859.2 mRNA upstream 328692 25704174 ~ 25768792 (-) False lmx1bb
XM_036979725.1 mRNA upstream 333770 25709252 ~ 25768796 (-) True lmx1bb
TU555826 other downstream 66291 25106205 ~ 25106570 (-) True G489038
TU555288 other downstream 463441 24706571 ~ 24709420 (-) False LOC110525585
TU555289 other downstream 497960 24660897 ~ 24674901 (-) False LOC110525585
TU555138 other downstream 819038 24353533 ~ 24353823 (-) True G488386
TU554111 other downstream 1455078 23713875 ~ 23717783 (-) True LOC110525552
TU556319 other upstream 121481 25496963 ~ 25497489 (-) True G489511
TU557298 other upstream 904225 26279707 ~ 26283169 (-) True LOC110525606
TU557449 other upstream 1080250 26455732 ~ 26457841 (-) True tmem230b
TU557799 other upstream 1171740 26547222 ~ 26551627 (-) True LOC110525619
TU558306 other upstream 1449385 26824867 ~ 26867158 (-) True G491291

Expression Profile