RNA id: XM_021605872.2


Basic Information

Item Value
RNA id XM_021605872.2
length 4074
RNA type mRNA
GC content 0.40
exon number 8
gene id pbx3b
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 25978954 ~ 26067633 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACACGTTTGCACTGAGTGAGTGGCATTGGCACACTTTCAATCGCTCACTACCTCTGCCATCAAACAACATAAAGCACACAGAGGCAGAGGCTCGCGCTCATAAATTTCAGCAGGCAGATATTTTTGCGCATCGCTTTACAGCTTGTAGCCTAATTAATTTCTCGCTGTtctttttttctataatttttccACTAatgcaaaacatttaaaaaaataattgcaATAAATTTACAGGTAGCAGGTAGGCCTACTAATTTACTGCCTAAGTGttctattttttatattttcattcACATATTTATTGTTAATTTTCACTGGATATTTTGTTTCCTGCTGACAATAATGGGGATTTGAACATTTTCAAGAGGAATTGTACGAGGAAACATAATCAAAAGAAGACGACTAATAAATGACAGATCAGCAAGGAGCAATCATACACAACTCGTCAACTCAAAAGAGAAAGACGAATTGGCAAGAGGACTCCTGCAGGATACGAGGGACAGCGGCTGTCATTTTGACAAATAAGTTTGAACAATTATAGCTTATGTATTTTCGGACAAAAACATTTATAGATACTCACACTTCGGACCGTGCATAAAGAAGGAAGATTGCAAGAAAGTGATTACTTGGACACGCGATATTGATACCATTACTGGTACTCAGCTAACGTTAGCCCATTTATTTTTTCTTATAGGCTACGCGTAAACGCAATATCACCAATATACAGCTCTCTAACGCAACACATGTTGTAGTTGTTTTTTTGTATGTGAGTTTTTCAAGCCAAGTTTCCATTTGTGTGGCTTCGTGATTCTGTTTCGGCTGACTATGGACGAACAAGCCCGGATCATGCAGGCTCTCGGCGGTGTCAGCTTGGCTGGCCACTCGATACAAGGAGGCATGGCACTGCCGCCTCCACATGGACACGATGGGATAGATGATGGGAGAAAACAAGATATCGGTGACATTCTGCATCAAATAATGACCATTACTGACCAAAGTCTGGACGAGGCGCAAGCAAAGAAACATGGACTGAACTGCCACAGAATGAAACCTGCACTCTTCAGCGTCCTCTGCGAGATCAAAGAGAAAACAGGCCTCAGCATCCGTGGTGCCCAGGAGGAGGACCCTCCCGACCCCCAGCTCATGCGTCTGGACAACATGCTGCTGGCGGAGGGCGTGTCAGGACCAGAGAAAGGGGGTGGATCCGCCGCTGCCGCCGCTGCAGCCGCAGCTTCGGGAGGGGCCTCAGACAACTCCATCGAACACTCAGACTACAGAGCCAAACTCACCCAGATCAGACAGATCTACCACACAGAGCTGGAGAAATACGAACAGGCGTGTAACGAGTTCACCACCCATGTGATGAACCTGCTGAGGGAGCAGTCCCGCACGCGACCCATCTCTCCCAAAGAGATAGAACGCATGGTTGGCATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTCAAGCAGAGCACCTGTGAGGCCGTCATGATCCTGCGCTCTAGATTCCTTGATGCCAGGCGGAAAAGGAGAAACTTCAGCAAGCAGGCGACGGAAATCTTGAACGAGTATTTCTACTCGCACCTCAGCAACCCATATCCCAGTGAAGAAGCCAAAGAGGAGTTGGCCAAAAAGTGCAGCATTACAGTATCCCAGGTATCCAACTGGTTCGGCAACAAGAGAATCCGGTACAAGAAGAACATAGGCAAGTTCCAGGAAGAAGCTAACCTGTACGCTGCTAAGACTGCAGTAACAGCAGCGCATGCAGTGGCCGCCGCAGTGCAGAACAGCCAGACCAACTCCCCTACCACACCCAACTCCGgtGGATACCCTGCGCCATGTTATCAGTCAGACGGCAGGATACAGTGAAGCTCTAGGGGGGAACACTATGTACAGTCCACACGGCTTGGATGCTAATGGGGGATGGCACGATACAACTACTCCATCTGCTGTAATCTCCCCAACAGAAGGACCTGGAAGTGTGCACTCTGATACCTCAAATTGATCTCTGTTATCGATGCATCTGATCCCCAAGCTGTAAAGCCTGAACTTTCACTGACTGACCAACCAGAGAGGATAAACAAAACTTTTTTTTCAGAACTAATTGTCTGCTGCATCTACCAGAGTCCTCAACTCCCCTCGCAATGACTTTCTACAATGTGGACACCTGATGTTTTCTTGGTAGTTCAGTGAAGTTGTCACTCAAAGTTCATCAGTCTCATGATTATAATTCACCATTGCTATAGTTATGTTTGTCATTTGAAGGGGTAAGCACGTAGTGTACAAATCAAACAAGACCCAGCTCTTTATTGTGCaacattcatttcaattgacaatTGATTTAAGAAATTATCTTTCCCAAGCTGAAATTATTCCCAGTGCTGAGTGGATGACATTATGTGTTGTCATAGTTATTCTAAAACGTTTTGGTTTTGAAAtgcaatatatatacagtacgagtcaaatgtttggacacacccactcattccagggcttttcttcctttttactattttctacattgtagaataatagtgaagacatgaaaactatgaaataacacatatggaatcatgtagtaacaaaaaagcgttaaacaaatatatatttttaatttgagattcttcaaagtagccaccctttgccttgatgacagctttacccactcttggcattctctcaaccagcttcatgaggtagtcacctggaatgcatttcaattaacaggtgtaccttgatttgtggaatttatttccttcttaatgcgtttgagccaatcagttgtgttgtgtccaaacttttgactggtactgtatatatttccttGTTTCTTGGTCTCTTTCCGTATATTGACTAACAACGTAGCGGTTCTATCACTGAATGCCAGGAGTGATGTTTGTCTGTAATGTTGTACAGCAACTAAATAAAGCTCCCATTGTAAACTCTATGGCAGCTTGGGAGAGTTACTTTCAATATTAGTTTTGCTTTACAACCACCAGTTTGAAATGCGTTAGAAGTAATTGACAGTAGAAGTTAATTGACAATGCTAATGGGATAACTCTGTATTTTACAAACTTGCAACATATTTGACAGTTATCAACAACAAAAGCATAAAAAGACTGGGGTGATTGTCAAACATAGAAAAGCATGAAAGTCATGtgatatttaaatatgtttttgttcTTGCTATGGGTTGACATAGTCATGGGTCTAACCGTAAATCCAACCAGTTATAGCACTTCCTTTTGGCATGTGACAAGATACCAGTCACACAAAATATGTTGTATATAATATAGCTTAAGAGTATTTATACATCCCACGAAATCAATACACAGCTTTATTACCTCATTCAAAATCATAGAAACCAATAGATTTTCAACATTTCTATAGCTTAGAGTGCTCACTTACTACCTCTAAACAATATCACGACCATagttttttactttttatttaacatttttatttagtTGTTTTGATTTTATCTTGTAATTAACTCTTTGTTTTTGTTCATGTAATCTAATGTATATTTTAATCTTTTAAGAAAACAAAGTTGCTTTGTTGCaactgtaaaaaacaaaaacaagaacattgatGATGTTAACAATAATATTAATACTAAGAATAGTGAAAAAATTCAGTAACATAAAAATAAGAGGGAGGTGCAAAATTGTTGGTTGGTGGATTTTGAGGGAGGGTTGGGAGAATGTTGGTCATAAATTAACACCAAACAGTAAAACTGTTGTAAATACTGAAGAACATTTTGAATGTTTGTCATCTTGTTACTAATTCACGCAAAAAAACATAAAAACTGTAATGCATAGAGGTTTCAGTATTCTGAACTGTACATTTCAAGCTCTGTTTGACAGGGTTCAAACTTTCTTTGTCTTTTTTGTATTGTATGTGATTCTGAAACAGAAAAGTCATGACAAATGATTTGTGGCAGTGATTCTAATGTATTACAAATGTTTAGTGTTTCTTTCTAACCAGACCACACCCTGGACTGAAAAGTCTTCCTTGTGGTAGTTGTGTAATTTCAAACATGAATAAACTTTTTGCTTTCAAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU556806 lncRNA downstream 10322 25968402 ~ 25968632 (-) True G489983
TU556787 lncRNA downstream 22789 25955946 ~ 25956165 (-) True G489964
TU556736 lncRNA downstream 59590 25919106 ~ 25919364 (-) True G489913
TU556710 lncRNA downstream 77736 25900999 ~ 25901218 (-) True G489887
TU556703 lncRNA downstream 85566 25893169 ~ 25893388 (-) True G489880
TU556979 lncRNA upstream 13673 26081305 ~ 26081736 (-) True G490145
TU557299 lncRNA upstream 156337 26223969 ~ 26224340 (-) True G490431
TU557375 lncRNA upstream 287782 26355414 ~ 26355872 (-) True G490506
TU557380 lncRNA upstream 297573 26365205 ~ 26365445 (-) True G490511
TU557383 lncRNA upstream 301625 26369257 ~ 26370378 (-) True G490513
XM_036979725.1 mRNA downstream 210158 25709252 ~ 25768796 (-) True lmx1bb
XM_021605859.2 mRNA downstream 210162 25704174 ~ 25768792 (-) False lmx1bb
XM_021605860.2 mRNA downstream 210163 25704174 ~ 25768791 (-) False lmx1bb
XM_021605858.2 mRNA downstream 318705 25643232 ~ 25660249 (-) True LOC110525601
XR_002473781.2 mRNA downstream 527742 25449019 ~ 25451212 (-) False LOC110525597
XM_021605883.2 mRNA upstream 166920 26234552 ~ 26263790 (-) False LOC110525604
XM_036979727.1 mRNA upstream 166920 26234552 ~ 26263790 (-) False LOC110525604
XM_036979729.1 mRNA upstream 166920 26234552 ~ 26263790 (-) False LOC110525604
XM_036979731.1 mRNA upstream 166920 26234552 ~ 26263790 (-) False LOC110525604
XM_036979732.1 mRNA upstream 166920 26234552 ~ 26263790 (-) False LOC110525604
TU556319 other downstream 481465 25496963 ~ 25497489 (-) True G489511
TU555826 other downstream 872384 25106205 ~ 25106570 (-) True G489038
TU555288 other downstream 1269534 24706571 ~ 24709420 (-) False LOC110525585
TU555289 other downstream 1304053 24660897 ~ 24674901 (-) False LOC110525585
TU555138 other downstream 1625131 24353533 ~ 24353823 (-) True G488386
TU557298 other upstream 212075 26279707 ~ 26283169 (-) True LOC110525606
TU557449 other upstream 388100 26455732 ~ 26457841 (-) True tmem230b
TU557799 other upstream 479590 26547222 ~ 26551627 (-) True LOC110525619
TU558306 other upstream 757235 26824867 ~ 26867158 (-) True G491291
TU558571 other upstream 1148975 27216607 ~ 27244193 (-) True G491539

Expression Profile