RNA id: XM_021605892.2


Basic Information

Item Value
RNA id XM_021605892.2
length 1541
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110525611
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26382960 ~ 26391291 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGGACTTTAGATTGGCAGCACTTACCtacggagaggaagagaaacTAGCACATTGATGGAGTATTTTTGGTAAAACGTTAGTTGCGAAATTTATTTACAAATACCATATACAAACCTCGTATTTGAAGTGGATATTAGCTGTCTTCCTTGTTTATGTGTATGACGTTTGCATAGCTACGACTAGCTTGCTGTTTTGGTAGCAGCATTATCAGTTGCCAATAACAAGTCACTAGCTAGATAGCAGCTTGCTAGCAATGAACGACACTGTGGCCCTTCTGCAGAAATTCAATGCGCATCCAGATTCCCGCTGTTGGTATGTGGCATGGAACCCCAAAGGCACATTGCTGGCATCATGCGGTGGTGACCGAGCCATTCGGATATGGGGAAGGGAAGGTGACTCTTGGGAATGTAAGACCTTGCTCCAGGATGGACACCAGAGAACTGTCAGAAAGGTGGCATGGTCCCCATGTGGGAACTACCTGGCCTCAGCCAGCTTTGATGCCACAACCTGCATCTGGAAAAAGAAGAATGATGATTTTGAGTGCTTGACTGTGTTGGAAGGACATGAGAATGAGGTCAAATGTGTGGCCTGGGCCCCATCCGGTAACTTGCTGGCCACATGTAGTAGAGACAAGAGCGTCTGGATCTGGGAAGTGGATgaggagaatgagaatgagaatgagtatgagtgtgtgagtgtggtaAACTCTCATACACAGGATGTCAAGCATGTTGTCTGGCACCCAACACAGGAGCTCCTCGCCTCATGTAGCTACGACAACAATGTGTGTGTCTATAAAGAAGAGGATGATGACTGGGAGTGCAGGGCGACCCTGGAAGGACACACCTCCACTGTCTGGGGTTTGACCTTTGACCCAAGTGGCCAGCGGCTGGCCTCCTGCAGTGATGACTGTACTGTAAAGATCTGGAAAGAATGTCAGCCAGAAGGGTTTCATGGACGGACAGTGTATGATATTGCATGGTGTCCACTGACGGGTGCCCTGGCGACTGCATGTGGTGATGACGGAGTACGTGTGTTTAAGGAGGATGAGACTGCTGACCCAGACCAGCCTGCTTTCTCCCTGTCTGCCCATGTACCCAAGGCCCACACCCAGGATGTCAACTGTATCGCCTGGAACCCCAAGGAGGCTGGGCTCCTTGTCTCCTGCAGTGACAATGGGGAGATAGCAGTCTGGAACTACCAGTCTGGGGTCTGagaacatgtacagtatgtggggCTAGTTAGGACTTCCAGATCCAGTGTTTAACAATGCTGAATTTACCTTGTACTGTCAAGGGTGCCAACAGCACTGAAATTGTCATGTATGATGTTTATTATTAATCCCTCTTGCAATAACCTGTTTTAATGAGGTTAGAGTGGTTTTGATTTCATTATACTGATACCTGCCTGTGCACTTGTGGTTCAAAACTGAATGTGGGCCCtaaatgtcataattatgtatttgattaacaatacaatatacacattccAATGGTGTTTTGTAATATCAAGAAAATAAAATTGTCATAGCTATGTAA

Function

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0097361 CIA complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557383 lncRNA downstream 12582 26369257 ~ 26370378 (-) True G490513
TU557380 lncRNA downstream 17515 26365205 ~ 26365445 (-) True G490511
TU557375 lncRNA downstream 27088 26355414 ~ 26355872 (-) True G490506
TU557299 lncRNA downstream 158620 26223969 ~ 26224340 (-) True G490431
TU556979 lncRNA downstream 301224 26081305 ~ 26081736 (-) True G490145
TU557495 lncRNA upstream 74711 26466002 ~ 26466279 (-) True G490616
TU557501 lncRNA upstream 76230 26467521 ~ 26468331 (-) True G490621
TU557796 lncRNA upstream 89796 26481087 ~ 26535452 (-) False LOC110525619
TU557834 lncRNA upstream 152199 26543490 ~ 26544586 (-) True G490886
TU557869 lncRNA upstream 217557 26608848 ~ 26648515 (-) True LOC110525621
XR_002473782.2 mRNA downstream 48127 26330079 ~ 26334833 (-) True LOC110525608
XM_021605885.2 mRNA downstream 65644 26293688 ~ 26317316 (-) True LOC110525607
XM_021605886.2 mRNA downstream 65645 26293688 ~ 26317315 (-) False LOC110525607
XM_021605884.2 mRNA downstream 99792 26271759 ~ 26283168 (-) False LOC110525606
XM_036979728.1 mRNA downstream 118925 26234552 ~ 26264035 (-) True LOC110525604
XM_021605895.2 mRNA upstream 12895 26404186 ~ 26455417 (-) False igsf9b
XM_036979735.1 mRNA upstream 12895 26404186 ~ 26455417 (-) False igsf9b
XM_036979737.1 mRNA upstream 12895 26404186 ~ 26455418 (-) False igsf9b
XM_021605897.2 mRNA upstream 12895 26404186 ~ 26455419 (-) False igsf9b
XM_036979736.1 mRNA upstream 12895 26404186 ~ 26455419 (-) False igsf9b
TU557298 other downstream 99791 26279707 ~ 26283169 (-) True LOC110525606
TU556319 other downstream 885471 25496963 ~ 25497489 (-) True G489511
TU555826 other downstream 1276390 25106205 ~ 25106570 (-) True G489038
TU555288 other downstream 1673540 24706571 ~ 24709420 (-) False LOC110525585
TU555289 other downstream 1708059 24660897 ~ 24674901 (-) False LOC110525585
TU557449 other upstream 64441 26455732 ~ 26457841 (-) True tmem230b
TU557799 other upstream 155931 26547222 ~ 26551627 (-) True LOC110525619
TU558306 other upstream 433576 26824867 ~ 26867158 (-) True G491291
TU558571 other upstream 825316 27216607 ~ 27244193 (-) True G491539
TU559251 other upstream 1343705 27734996 ~ 27736978 (-) True LOC110525653

Expression Profile