RNA id: XM_021605911.2


Basic Information

Item Value
RNA id XM_021605911.2
length 6050
RNA type mRNA
GC content 0.50
exon number 51
gene id LOC110525627
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26828158 ~ 26876043 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAGTCATGATGGCGGAACTGTAGTGTTTAGGACTAGAAAAGTATTATCCGCCCAGCAGttcacttatttatttatttatttatctatcatTTCCCCACAATGACCCGCTGGATTCCAACAAAAAAAGAGAAATATGGCGTTGCAATCTATAATTATGACTCCAGAAGAGAGCAGGAGCTGTGTCTCCAGGTGGGAGACACTGTACACATACTTGAGACATTTGAAGACTGGTATAGAGGGTACACAATACGGAACAAAGCACAGAAGGGCATTTTCCCAGCCTCGTATATCCATTTAAAGGAGGCTAAAGTTGAAGGGACAGGCCAGCAGGAAATAGTTATCCCAGGAGACCTACCACTGGTACTGGAGTTAGGCGCCACTCTGAGGGAATGGGCACAAATATGGCACAAGCTATATGTGAACAACAAGACCACTCTGTTCAGGGGCGTACAACAGATGGCCTACAGCCTCATCGAGTATCGATCTCAGATAGTGTCTGGAACATTGCCCAAGGATGACCTTGTGGAGCTCAGGAAGAAAGTCACAGCTAAGATTGATTATGGAAACCGGATTCTAGGGTTGGACCTGGTGGTGCGAGATGATGCAGGGAACACTCTGGACCCGGACTGCACAAGCACAGTCAATCTATTCCGAGCCTTTGAGACTGCATCCCGCAGTATAGATGACAGAATACAAGAGGAGAAGACCCGGAAGCAGAATCTGGAGATGCGGCGCCAGTCCCTGTTTAGCACAGTGCACACATACAGTCTCCTCATGAACCTCAAGAACTTTGTTTGTAACATCGGGGAGGATGCAGAGCTGCTTATGTCGCTCTATGACCCTGACCAGTCAGAGTTCATTAGTGAGAACTTCCTGGTGCGCTGGGACAGCATGGGCATGCCCAAAGAGATTGAGAAACTCAATAATCTGCCTGCCCTCTTCACGGATCTGAGCAGCAGTGACCTGATTAGGCCACGTCTCTTCCTCGTCTGTCAGATTATCAGGGTGGGCAGCATGGAACTCAAGGAGGGCAAGAAACACACAGGAGGGTTAAGGAGACCGTTTGGTGTAGCTGTGATGGACATCACAGATATCGCCCATGGGAAAGCAGATGATGAGGAGAAGCAGCATTTCATCCCCTTTCAGCAGATAGCTATGGAGACCTATATCCGTCAGAGGCAACTCATCATGTCACCTCTCCTCCCATCCCGGGTCATTGGAGAGAATGAGCCTCTCACCGCCGTCTTTAACAAAGTCATTAACACCCGGGAGGTTAACCACAAGGGCCAGGGACTGTTTGTGACCTTAAAGCTACTTCCTGGTGACCTGTCCCAGGTCAGGAAGGACTACTCCCACTTTGTGGATCGCACCACCGCCATTGTTAGAAAGATGGGCTTCCCTGAGATCATCCTCCCAGGATATGTGAGGAACGATATATATGTGACCTTGCTGCAGGGGGAGTTTGACCGCGGTAAAAAAACGTCACCCAAAAATGTTGAGGTGATGTTGAGTGTACTAGATGACGATGGCAATCTCATGGAGAAAGCAATATTTCCTGGAGCTGGATATGATGGGATCACAGAGTACAAGTCTGTAATTTACTACCAGGTCAAGCAGCCGAGCTGGAATGAAACAGTCAAGGTGACTATTCCGATTGAAGATGTGGGCCGCTGTCATCTCAGAGTGATGTTTCGACACAGATCATCTCAGGACTCTAGAGACAAATCAGAAAAGCCATTTGGCATGGCGTTCGTCCGCCTGATGAAAGGAGACGGAACCACACTGAGAGACGGCAGACATGACCTCATTGTCTACAAGGTTGATGTAAAGAAGACTGAGGATGCAAAGACATACCTGACTCTGCCAGGCTCCTGGGCtgaggtggaggagaaggagaggcagacagggaaaaCCTTTCAGCATTCAGGAGTCATCCCAGTCACAAAGGACAGCTTCCAGATTGGCACTCTCACCTGCTCCACTAAACTCACCCAGAATGTGGATCTCCTGGGCCTATTGAACTGGAGGTCCAACCCTGAACAGCTGGACCAGAACCTGCAGCgcctgatggaggtagagggaggagagattgTCAAATTTCTACAGGACACACTTGATGCCCTGTTCAACATCATGATGGAGACTTCAGAGAAGGACACCTATGACAATCTGGTCTTTAATGCTCTGGTGTTTATAATCACACTGATTGGAGACATCAAGTTCCAGCACTTTAACCCAGTACTGGAGACATACATCAACAAACACTTCAGTGCCACTTTGGCTTATATGAAGCTGACCAAGGTTCTGAATTACTATGTGGGCCATGCAGATAAGCCTGTCCTAACAGAGGGGCTGTACTCAGCCCTCAAAGCCCTCAAGTACCTGTTCAGGTTCATTGTGCAGTCCCGGGTCCTCTACCTCAGATTCTATGGGACCAGTGAGGATGGGGATGCTTTCTTTAACTCCATCCGGacactcttcctctccttcaaCACACTCATGGACAGACCGCTAGACGAGGGAGTGAAGATAAAGGGGGCGATACTGAAATACCTCCCCACCATCATTAATGACATAAAAAATGTCTTTGACCCTGTGGAGCTCAGtGTTCTTCTGACCAAGTTCATCGAGAGCATCCCTGACTCTCAGCTGGTGCGCCAGAAGCTTGGTTGCATGTGTAAGATGGTGGAGAGTGACCTTTTCAAAAAGCCAGAGTGTCGAGATGTCCTCTTGCCACTGTTGACTGACCAGCTGAGTGGGCAGCTGGATGACCACTCCAATAAGCCTGACCACGAGGCCTGTGTTCAGCTGCTCAGCACTGTGCTTGACAACCTGGACCGCAAGGATGTGGGTCCAACCCGAGGTCATGTCCAGCTGATTATGGAGCGACTGCTTCGCAGGGTCAATCGCACTGTCATCAGCATGAGCAGAACCTCCCCTCTCATTGGTCATTACCTAGCCTGCATGACTGCCATCTTGAAGCAGATGGATGACATGCACTACGCCCACTACATAAGTACTTTCAAGACCAGACAGGACATTATTGACTTCCTGATGGAGACATTCATCATGTTTAAGGACCTGATGGGGAACGTTTTTCCCTCTGACTGGATGACCATGAACCTTCTGCAGATTGGGGTGTTTCTGCGGGCCATCAACCAGTACTCTGAGGTCCTCAACATGTACTTCCTAGACCAGACCCACTTTGAGCTGCAGCTATGGAACAACTACTTCCATCTGACTGTGGCATTCCTTACCCACAAGTCATTGCAGCTGGAATCCTTCTCTCAAGAGAAACGGAACAAAATACTTAACAAGTATGGAGACATGAGGAAGAGCATTGGCTTTAAGATCAGAGACATGTGGTATAATCTTGGCCCCCACAAGATGAAATTCATCCCTGCCATGGTGGGGCCCATCCTGGAGGCTACCCTGGTGCCTGAGCCAGAGCTTAGGAAAGCCACCATCCCCATCTTCTTTGACATGATGCAGTGTGAGCACAACTTCACTCCCAGCCGTACCTTTGACATGTTTGAGAATGAACTGATCACCAAGTTGGATCAGGAAGTAGAGGGAGGCAGTGGGGATGAACAGTACAAAATCCTGCTGGAGAAAACGCTACTGGAGCACTGCCGGAGGCACAGATACCTGTCTCAGTCAGGGGAGGAGCTGGCTCTGCTGCTCAGCAGTCTGCTGGAGAAGCTACTGGCATACCGCACCATCACACATGACGAGAGCCCTGAGCTCCGCATGAGCTGCACCGTCAACGTCCTGAATTTCTATAAAGAGAAGAAACGGGAAGACATTTACATACGGTATCTGTACAAGCTGAGGGATTTACACCTTGTCTGTGAGAACTACACAGAGGCAGCCTATACCCTGTTACTTCATGCCGAACTCCTTGAGTGGTCTGACAAGCCCTGTGCACCTCATCTGATCCCCGGTGACGGCCAACATGTCTGGACCCAGCAGGAGCTCAAAGAGAGGCTCTTCCAGGAGATAATCTGTTACCTGGACAAGGGCAAAATGTGGGAGAAAGCCATTGAGATGGGTAAACAGCTGGCAAAGATGCACGAGAACCAGATGTTTGACTTCATGGAGATTAGCCAACTGCTGAAACAGCAAGCCCAGTTCTATGAGAATATAATGCATGCCATGCGGCCTCAGCCAGAATACTTTGCTGTGGGATACTATGGCCTTGGATTCCCCACTTTCCTCAGAAACAAAGTGTTCATCTACCGTGGTAAGGAGTACGAGTGGCTGGAGGACTTCAGTCTGAAGCTGCTGTCTCAGTTCCCAAACGCCGCCAGGATGACCAGCACAGCGCCCCCTGGGGACAACATCTGTAACTCCCAAGGACAGCACATCCAGTGTTTTACAGTCAAGCCAGTCCTTACTGTGCCCACCCAGTTCAAAGACAAGGGGGTCCCTGAGCAGATTCTAAAcTACTACAGAACCAATGAAGTGGACCAGTTCCAGTATTCCAGACCCTTCAGGAAAGGTGCAAAGAACCCAGACAATGAATTTGCAACCATGTGGATCGAGAGGACAACTTACATCACGTCCTATTACTTCCCAGGGATTCTCAAATGGTTTGAAGTGAAGTCCATCTCTGTTGAGGAGATCAGCcccctgcagaatgctgtggaaacCATGGAGATGGCCAATGAGAAGCTCAGTAACCTGGTGCAGCAGCAGGCCTGTGACAGCTCCACGTCAGTCCACCCACTCTCCATGATGCTCAATGGCATTGTTGACCCTGCCGTCATGGGTGGCTACACCAACTATGAGAAGGCGTTCTTCACTGACACCTACATACATGAACACCCAGAGGACCTTGAGAGCATTGAGGTCCTCAAACATCTTATTGCCCTCCAGatCCCTCTCCTGGCTGATGGGATCCGGATCCACGGGGAGAAATCCACGGAGCAGCTGAAGCCCTTACACAATCGCCTGCTCACCTGTTTCTCTGACCTGCGGGAGAGAGTGGAGAAGCATTACGGCGTCATAACCCTGCCCTGCTCGCTGACTGAGAGGAAGATGAGTCGCGTGGGCTCAGTAGTGATTCCCTACATCCTGTCCTCCACCCTGCGCCGCATGTCCACCGTCTCCAtcatctccaccacctcctcaggCCTCTCCAGCGGCTCCGCTTCCTCTGATGGACCCTCACGGCGCTCCTCCTCCCAGGATTCACTGTTGTCCCGTGCCACTGCCAATGATCGCCGGGCCTCGATGTTGTCCCGCTCGGAAAATGACAACCGGATTGGCCGAAAGAACAGAAAAGAATGGAGTGTGAGCAAGTCACAGGTTTTGGTGGAGAGACAGCCAGACATAGATGAGACCCTTCCAGAGAAGCAGCAGAGACCCAAAAGTCTACAGTTTGGGGACCGTCgcctgaccctgtctctgttccagggaGCCTCTTCTCAGCTCAGCCTTGGCAACCCTCTCAGCCCCCTGCCAGCCTCTCCTCACACTCCTCGCAGCTCCAGTTATTCATCTCTCCTTGAAGATAATGATGCCACCACTGACACTCCTGGGACACCCCCACCCATGCCACCAAAGAAACATCCCCACGAGATGTTTGACCTCCCCCAAAACTCCTCTGAGTTCCTTCCTCCTCTGCCTCAGAAAATTGAAAGCaagccccctccacctcctcctaaGACCAGGAAGTCTATGTTCCCCGGCTCCTACGAGCAAAGTCCTCAGTGAGGATCCTCCACCTGCTGCCTGggatggcttgtttttttttgtggtaCTGTAGCACTTTATTGTTACATAACTATTACAGGACCAGTACCTGTTATGTACTTCAGAATTACATGTCAACAATTTCTATTGCTGATACATACGACAAGTAAGAACCAACCAACTGGTTCTTGTGGTGTATGTGCCCTGTGAATATCTAAGAAAcaagcatacagttgaagtcattaaaactcgtttttcaaccactccccaaatttcttgttaataaactatagttttggcaagttggttaggacatctactttgtgcacgacacaagtcatttttccaaaa

Function

GO: NA

KEGG:

id description
K17707 DOCK5; dedicator of cytokinesis protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU558017 lncRNA downstream 5001 26822893 ~ 26823157 (-) True G491027
TU557969 lncRNA downstream 9533 26755780 ~ 26818625 (-) True G490982
TU557963 lncRNA downstream 77595 26746242 ~ 26750563 (-) True G490978
TU557938 lncRNA downstream 98674 26707102 ~ 26729484 (-) True G490963
TU557869 lncRNA downstream 179643 26608848 ~ 26648515 (-) True LOC110525621
TU558441 lncRNA upstream 163001 27039044 ~ 27039874 (-) True G491417
TU558505 lncRNA upstream 233331 27109374 ~ 27110138 (-) True G491475
TU558465 lncRNA upstream 262113 27138156 ~ 27140754 (-) True G491435
TU558522 lncRNA upstream 268836 27144879 ~ 27145306 (-) True G491492
TU558527 lncRNA upstream 277663 27153706 ~ 27192358 (-) True G491497
LOC110525624 mRNA downstream 87515 26738279 ~ 26740643 (-) True LOC110525624
XR_002473788.2 mRNA downstream 95214 26726252 ~ 26732944 (-) True LOC110525623
XR_005052047.1 mRNA downstream 104132 26713456 ~ 26724026 (-) False LOC110525622
XR_005052451.1 mRNA upstream 1279 26877322 ~ 26877454 (-) True LOC118965120
XM_021605918.2 mRNA upstream 7820 26883863 ~ 26888305 (-) True LOC110525629
XM_021604982.2 mRNA upstream 375015 27251058 ~ 27252377 (-) True LOC110525021
XM_021605944.2 mRNA upstream 394778 27270821 ~ 27278551 (-) True LOC110525638
XM_021605946.2 mRNA upstream 466902 27342945 ~ 27351871 (-) False LOC110525639
TU557799 other downstream 276531 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 370317 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 544989 26279707 ~ 26283169 (-) True LOC110525606
TU556319 other downstream 1330669 25496963 ~ 25497489 (-) True G489511
TU555826 other downstream 1721588 25106205 ~ 25106570 (-) True G489038
TU558571 other upstream 340564 27216607 ~ 27244193 (-) True G491539
TU559251 other upstream 858953 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 951188 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 2535172 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 2602612 29478655 ~ 29483346 (-) True LOC110525681

Expression Profile