RNA id: XM_021605945.2


Basic Information

Item Value
RNA id XM_021605945.2
length 1532
RNA type mRNA
GC content 0.53
exon number 10
gene id LOC110525639
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27342945 ~ 27351891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTCTGTGCTGGGGTCCAGACAGTTTAAGGTCTGGCTGGGCTCTAACTTTGCATACTTACCAGATCATTCAAACTGCCCTCTTTCAGCCCCCATGGCCACTACTATCACAGACTCACAGAAGCCTTTCTCTTTGGACCCCTACCATGTCTCTGAGGAATTTGGCTTCATCCTCCCTGCACCCCTGACAGAGTTGCCGCCATACTACCAGCCCTGGATGGACATTGCCCAGCATGTTACAGAGCTCATTTACTCTCACATGCTGCGCTCCCACATTCTCAAGATGCCCCTGCTGAACACCCAACTCCTGGAGAGCCACAGAGAGCTGCGTCTGGCCCACTTGGCCCTGAGTGTGATGACCATGGGTTACGTGTGGCAGGAGGGGGAGGATGACACAGTCAAGATGCTTCCCCGCAACCTGGCCATTCCATACTGTGAGGTGTCTCAGCGCCTAGGACttcctcccatccttacccatgcAGACGCAGTACTGGCTAACTGGAGGAAGAGGGATCCACAGGGACTGTTTGACATGGAGAACTTGGAACTGCTTGTCACGCTACCTGGTGGGGACAGTGTGAGAGGGTTCTTCATGGTCACTCTGCTAGTGGAGCTGGCTGCAGTGCCAGCCATTAAGAGTATTCCTTTGGTTATTAATGGGGTCCAGTGCGGTGATGCTGAGACTGTAACCAGAGCACTAGAGGAATTCAGCCAGGCCATACAGGGCATGACAGATGCACTTAAACTGATGCATGTGTATGTCAAACCAGAAGTCTTCTATGGCATTATGAGGATCTATCTGTCTGGGTGGAAAGACAACTCCTCCATGCCAGCTGGGTTGGTGTATGAGGGCGTCCAGGCAGAGCCTATGGAGTATTCTGGTGGGAGTGCTGCCCAGAGCAGTCTGCTGCACTGCTTTGATGAGCTGCTGGGTGTCAAACATGAAGCAAAGAGTGGTATCCTAAAGACGTCATTTCCAGTGAGGGTGAATGTGCTATCTACATGTACAGGTGCCTTTCTGACCCGTATGAGGAACTACATGCCCCCTTCCCACAAGCGTCTGATCCAGGACATCTCTCTGCAGCCCTCCCTGCGAGGCTTTGTCCAGCAGCAGGCCTGTGAGCCGCTAACCGCAGCCTTCCAGCTCTGTGTGACCAAGCTGCTTGCCCTCCGCAGCTACCACATCAACGTGGTCAGCCGCTTCATCACTGTGCCCGCTGCCCGTGCCCGACAGCTCCGAAACCAGGGGAACATTTCCCAGGAGGAGACTGTCAGCAGGGCGCCCACGGCACTGGAGGAGAAGGGCACCGGCGGCTCGGGCATCATGAGCTTCCTAAAGACTGTAAGGGACCGCACACGGACGTCTTTAATCTAAACTAGAATGTAAAATATGTATCGGATGACTAGTCCAGACCGACTGTGCTCATACCACAGTCCCCAATTCCTGCATGAGAGtcagacgccttgactttttctacattttggtaTGTTTAAGTATTATTCTAGAATTGATTAAATAGCCTTATGTTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU558639 lncRNA downstream 22307 27320408 ~ 27320638 (-) True G491603
TU558638 lncRNA downstream 22584 27320129 ~ 27320361 (-) True G491602
TU558634 lncRNA downstream 25845 27316878 ~ 27317100 (-) True G491598
TU558527 lncRNA downstream 150587 27153706 ~ 27192358 (-) True G491497
TU558522 lncRNA downstream 197639 27144879 ~ 27145306 (-) True G491492
TU559124 lncRNA upstream 144300 27496177 ~ 27506760 (-) True G492067
TU559201 lncRNA upstream 249468 27601345 ~ 27601642 (-) True G492122
TU559206 lncRNA upstream 254808 27606685 ~ 27607004 (-) True G492127
TU559229 lncRNA upstream 275403 27627280 ~ 27627646 (-) True G492145
TU559230 lncRNA upstream 276014 27627891 ~ 27628877 (-) True G492146
XM_021605944.2 mRNA downstream 64394 27270821 ~ 27278551 (-) True LOC110525638
XM_021604982.2 mRNA downstream 90568 27251058 ~ 27252377 (-) True LOC110525021
XM_021605918.2 mRNA downstream 454640 26883863 ~ 26888305 (-) True LOC110525629
XR_005052451.1 mRNA downstream 465491 26877322 ~ 26877454 (-) True LOC118965120
XM_021605911.2 mRNA downstream 466902 26828158 ~ 26876043 (-) True LOC110525627
XM_036979754.1 mRNA upstream 193731 27545608 ~ 27560519 (-) False LOC110525643
XM_036979751.1 mRNA upstream 193731 27545608 ~ 27560533 (-) False LOC110525643
XM_036979753.1 mRNA upstream 193731 27545608 ~ 27560533 (-) False LOC110525643
XM_036979752.1 mRNA upstream 193731 27545608 ~ 27560556 (-) True LOC110525643
XM_021605960.2 mRNA upstream 209680 27561557 ~ 27569913 (-) False LOC110525644
TU558571 other downstream 98752 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 475787 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 791318 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 885104 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 1059776 26279707 ~ 26283169 (-) True LOC110525606
TU559251 other upstream 383119 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 475354 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 2059338 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 2126778 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 2150376 29502253 ~ 29503391 (-) True LOC110525684

Expression Profile