RNA id: XM_021605958.2


Basic Information

Item Value
RNA id XM_021605958.2
length 2434
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC110525644
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27561557 ~ 27578521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTTGGTGAACAAACACCCCCTTACTATTGAGCGAGTCATGTAGGCTAATTAGGTACGAAAAACACTGAAAGAAGTGTGTCCCGTGTCCCAATTAGGTACGAGAGCAATGTTGCGCGACGCGAGAGAACAGGGAATCTGAGAGCCAAGAGTAGCCTACTGGCGAGAGCGTTCAGGCGTCATCTATCCATCGTCTTTCTGTAGCTACAAACATCCAATCTTCACTGGCAGTATTGCAAGTGCCTGTGCTGCACCTGTCCATTATTTTAAATCGAGCGAAAACAGAATCGAAAACAGTCAGCGACAGATGTGATTCGATTTTTTAAAACTAAAAGATAGACTATACTGCAAGCATTCGATTTTCAGACTTTCTTGCTGATGTCCTTCAGGTAGCTCTGCACCGCTCTACAGAGGCAATGGGTACACTTCGAGACTTGCAGTTTGCCCTGCAACTGAAGATTGAGGAGCTTCGCCAGAGGGATACACTCATTGATGAGCTGGAGCTGGAGTTGGATGCCAAGGACGACTTGATTCGGAGGCTGCAGGGTGAACTGGACCGCTACAGGGCAACCATCACTCCCCCAGAGTCTTCTGGAGCTATTGAAGGGCATTCTGCACAGTGTGAAGAGATCCAGAGAACCAGAAGAAAGACCATATTGTCAAAGCCCCTCACTCAGGATCCAAGGCAACGTGCTTTGGCCACCTTGAAAAGCTACAACAAAAGCCAACAGTCACAGGAGCTGATTCAGACCTCCTTTTTAGAGAATGACTTTCTAAAGAACCTGGAAAGTGGGCAAATCCTGGCTATAATGGACTGTATGTACCCTACCACGGTCAACCAAGGCTGCTGCGTCATTCAAGAGGGAGACAGTGGAACTCTTGCCTATGTTCTAGAAGAGGGGAAGATGGAGATGACCAAGGATGCCAAGAAGCTTCTCACAATTGAACCAGGAAAAGTGTTTGGAGAATTGGCACTCCTGTACAGCTGCACCTATACCTATACTATATCAGCCCTAAAACACAGCATGTTGTGGGTTATTGACCGGCAGAGCTTTCAGACCATCATGGTGCAGAGTGGCCTCGGCAGACTGGTCGAGTTCAGAGAGCTCCTCTGCAGAGTACCCTTCCTGCGCTCGCTGCCAGAGGATGTGCTCATGAAAGTGTCTGATATTCTGGAAGAGAGTCGCTACAGTGAAGGTGATTATATTATTCGCCAGGGTGCCACAGGGGACACGTTCTACATCATCAGTAGTGGCCAGGTGAAGGTGACAGAGAACAAGTCAGCCGATGAAGAGGCAGTACTCTTGTCAACTCTCTCTGAGGGCCATTGGTTTGGAGAGAAAGCACTGAGGGGAGAGGATGTGCGGACAGTGAATGTCATTGCTGCTGGTGATGTCACATGCCTGGTTGTGGATAGAGAGTCTTTCAAAAAGATCATAGGTTTGGTAGAGGACAGTCATAATGTGCACAAGAGCAGCGAACTCAAAGCCCAGTCAGAGGAAGATGCAGCTCTCCTATCCAACGCCTCTCTCAGAGATTTCCAGGTCATCTGTAACCtaggagagggagaaacaggTCATTCAGAGCTGGTACAGCTTAAGACCAACATCAACTGCCTGTTCACCATGAGGGTGTTGAGGAAGCATCAGATCCTAAGCACTGCTCAACAGGAGTGCATCCTGAGGGAAAGACACATCCTCATGGCAGCTCATAGTCCATTCATCGTCAGGTTATACCGTACCTTCCGAGATGCAAAGTGCCTGTACATGCTGACAGAAGCTTGTTTAGGTGGTGAGCTCTGGAATCTACTGAAAGACAGAGGCTCGTTTGATGACAGTAGCACACGTTTTTACACTGCCTGTGTTGTTGAGGCCCTTATCTTCCTGCACCACAACAATATCACATACAGGGATCTGAAGCCTGAGAATGTAGTTCTTGACCAGCGTGGATATGCCAAAGTGGTGGGGTTTGGTTGTGCTAAAAAAGTGGGCTTGGGTAAGAAAACGTGGACGTTCTGTGGCACACCTGACTATGTGGCCCCTGAGATAATCCTGAACAAGGGGCACAGTGTGTCTGCAGATCTCTGGTCTCTAGGCGTCTTCGTGTTTGAACTGCTGAGTGGAAGTCTCCCATTCTGTGGCCCTGATCCTATGAAGACTTTCACAGCCACCATCCGTGGGATTGACCTGGTTGAATTCCCAAAAACCATCAGTAAGAGTGCCTCAAGCCTGATCAAGAAGCTCTGCAGGAACAACCCTGCAGAGAGACTGGGGAACCAGAGAAACGGGGCCAAGGACATCCAGAAGCACAAGTGGTTTGAAGGTTTCAACTGGGAAGGACTTCGCAAAGGCACTTTGTCTCCCCCAATCATACCGAAAgacaatgacccaacacaactccaggctgtgtaagggctatgtgaccaagaaggagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559124 lncRNA downstream 55668 27496177 ~ 27506760 (-) True G492067
TU558639 lncRNA downstream 241790 27320408 ~ 27320638 (-) True G491603
TU558638 lncRNA downstream 242067 27320129 ~ 27320361 (-) True G491602
TU558634 lncRNA downstream 245328 27316878 ~ 27317100 (-) True G491598
TU558527 lncRNA downstream 370070 27153706 ~ 27192358 (-) True G491497
TU559201 lncRNA upstream 22830 27601345 ~ 27601642 (-) True G492122
TU559206 lncRNA upstream 28170 27606685 ~ 27607004 (-) True G492127
TU559229 lncRNA upstream 48765 27627280 ~ 27627646 (-) True G492145
TU559230 lncRNA upstream 49376 27627891 ~ 27628877 (-) True G492146
TU559241 lncRNA upstream 66560 27645075 ~ 27645708 (-) True G492157
XM_036979752.1 mRNA downstream 1872 27545608 ~ 27560556 (-) True LOC110525643
XM_036979751.1 mRNA downstream 1895 27545608 ~ 27560533 (-) False LOC110525643
XM_036979753.1 mRNA downstream 1895 27545608 ~ 27560533 (-) False LOC110525643
XM_036979754.1 mRNA downstream 1909 27545608 ~ 27560519 (-) False LOC110525643
XM_036979750.1 mRNA downstream 210537 27342945 ~ 27351891 (-) True LOC110525639
XM_036979757.1 mRNA upstream 74270 27652785 ~ 27705335 (-) False LOC110525648
XM_021605968.2 mRNA upstream 74270 27652785 ~ 27705710 (-) True LOC110525648
XM_021605969.2 mRNA upstream 135616 27714131 ~ 27724002 (-) False LOC110525649
XM_036979758.1 mRNA upstream 135616 27714131 ~ 27724002 (-) False LOC110525649
XM_021605970.2 mRNA upstream 135616 27714131 ~ 27724003 (-) True LOC110525649
TU558571 other downstream 318235 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 695270 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1010801 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 1104587 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 1279259 26279707 ~ 26283169 (-) True LOC110525606
TU559251 other upstream 156481 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 248716 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 1832700 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1900140 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1923738 29502253 ~ 29503391 (-) True LOC110525684

Expression Profile