RNA id: XR_002473789.2


Basic Information

Item Value
RNA id XR_002473789.2
length 2345
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC110525644
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27561557 ~ 27578521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGAAACTTTGGTGAACAAACACCCCCTTACTATTGAGCGAGTCATGTAGGCTAATTAGGTACGAAAAACACTGAAAGAAGTGTGTCCCGTGTCCCAATTAGGTACGAGAGCAATGTTGCGCGACGCGAGAGAACAGGGAATCTGAGAGCCAAGAGTAGCCTACTGGCGAGAGCGTTCAGGCGTCATCTATCCATCGTCTTTCTGTAGCTACAAACATCCAATCTTCACTGGCAGTATTGCAAGTGCCTGTGCTGCACCTGTCCATTATTTTAAATCGAGCGAAAACAGAATCGAAAACAGTCAGCGACAGATGTGATTCGATTTTTTAAAACTAAAAGATAGACTATACTGCAAGCATTCGATTTTCAGACTTTCTTGCTGATGTCCTTCAGGTAGCTCTGCACCGCTCTACAGAGGCAATGGGTACACTTCGAGACTTGCAGTTTGCCCTGCAACTGAAGATTGAGGAGCTTCGCCAGAGGGATACACTCATTGATGAGCTGGAGCTGGAGTTGGATGCCAAGGACGACTTGATTCGGAGGCTGCAGGGTGAACTGGACCGCTACAGGGCAACCATCACTCCCCCAGAGTCTTCTGGAGCTATTGAAGGGCATTCTGCACAGTGTGAAGAGATCCAGAGAACCAGAAGAAAGACCATATTGTCAAAGCCCCTCACTCAGGATCCAAGGCAACGTGCTTTGGCCACCTTGAAAAGCTACAACAAAAGCCAACAGTCACAGGAGCTGATTCAGACCTCCTTTTTAGAGAATGACTTTCTAAAGAACCTGGAAAGTGGGCAAATCCTGGCTATAATGGACTGTATGTACCCTACCACGGTCAACCAAGGCTGCTGCGTCATTCAAGAGGGAGACAGTGGAACTCTTGCCTATGTTCTAGAAGAGGGGAAGATGGAGATGACCAAGGATGCCAAGAAGCTTCTCACAATTGAACCAGGAAAAGTGTTTGGAGAATTGGCACTCCTGTACAGCTGCACCTATACCTATACTATATCAGCCCTAAAACACAGCATGTTGTGGGTTATTGACCGGCAGAGCTTTCAGACCATCATGGTGCAGAGTGGCCTCGGCAGACTGGTCGAGTTCAGAGAGCTCCTCTGCAGAGTACCCTTCCTGCGCTCGCTGCCAGAGGATGTGCTCATGAAAGTGTCTGATATTCTGGAAGAGAGTCGCTACAGTGAAGGTGATTATATTATTCGCCAGGGTGCCACAGGGGACACGTTCTACATCATCAGTAGTGGCCAGGTGAAGGTGACAGAGAACAAGTCAGCCGATGAAGAGGCAGTACTCTTGTCAACTCTCTCTGAGGGCCATTGGTTTGGAGAGAAAGCACTGAGGGGAGAGGATGTGCGGACAGTGAATGTCATTGCTGCTGGTGATGTCACATGCCTGGTTGTGGATAGAGAGTCTTTCAAAAAGATCATAGGTTTGGTAGAGGACAGTCATAATGTGCACAAGAGCAGCGAACTCAAAGCCCAGTCAGAGGAAGATGCAGCTCTCCTATCCAACGCCTCTCTCAGAGATTTCCAGGTCATCTGTAACCtaggagagggagaaacaggTCATTCAGAGCTGGTACAGCTTAAGACCAACATCAACTGCCTGTTCACCATGAGGGTGTTGAGGAAGCATCAGATCCTAAGCACTGCTCAACAGGAGTGCATCCTGAGGGAAAGACACATCCTCATGGCAGCTCATAGTCCATTCATCGTCAGGTTATACCGTACCTTCCGAGATGCAAAGTGCCTGTACATGCTGACAGAAGCTTGTTTAGGTGGTGAGCTCTGGAATCTACTGAAAGACAGAGGCTCGTTTGATGACAGTAGCACACGTTTTTACACTGCCTGTGTTGTTGAGGCCCTTATCTTCCTGCACCACAACAATATCACATACAGGGATCTGAAGCCTGAGAATGTAGTTCTTGACCAGCGTGGATATGCCAAAGTGGTGGGGTTTGGTTGTGCTAAAAAAGTGGGCTTGGGTAAGAAAACGTGGACGTTCTGTGGCACACCTGACTATGTGGCCCCTGAGATAATCCTGAACAAGGGGCACAGTGTGTCTGCAGATCTCTGGTCTCTAGGCGTCTTCGTGTTTGAACTGCTGAGTGGAAGATGTCTCTTCCCAATCTTTACCTTTCCAGTCTCCCATTCTGTGGCCCTGATCCTATGAAGACTTTCACAGCCACCATCCGTGGGATTGACCTGGTTGAATTCCCAAAAACCATCAGTAAGAGTGCCTCAAGCCTGATCAAGAAGCTCTGCAGGAACAACCCTGCAGAGAGACTGGGGAACCAGAGAAACGGGGCCAAGGACATCCAGAAGCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559124 lncRNA downstream 59049 27496177 ~ 27506760 (-) True G492067
TU558639 lncRNA downstream 245171 27320408 ~ 27320638 (-) True G491603
TU558638 lncRNA downstream 245448 27320129 ~ 27320361 (-) True G491602
TU558634 lncRNA downstream 248709 27316878 ~ 27317100 (-) True G491598
TU558527 lncRNA downstream 373451 27153706 ~ 27192358 (-) True G491497
TU559201 lncRNA upstream 22824 27601345 ~ 27601642 (-) True G492122
TU559206 lncRNA upstream 28164 27606685 ~ 27607004 (-) True G492127
TU559229 lncRNA upstream 48759 27627280 ~ 27627646 (-) True G492145
TU559230 lncRNA upstream 49370 27627891 ~ 27628877 (-) True G492146
TU559241 lncRNA upstream 66554 27645075 ~ 27645708 (-) True G492157
XM_036979752.1 mRNA downstream 5253 27545608 ~ 27560556 (-) True LOC110525643
XM_036979751.1 mRNA downstream 5276 27545608 ~ 27560533 (-) False LOC110525643
XM_036979753.1 mRNA downstream 5276 27545608 ~ 27560533 (-) False LOC110525643
XM_036979754.1 mRNA downstream 5290 27545608 ~ 27560519 (-) False LOC110525643
XM_036979750.1 mRNA downstream 213918 27342945 ~ 27351891 (-) True LOC110525639
XM_036979757.1 mRNA upstream 74264 27652785 ~ 27705335 (-) False LOC110525648
XM_021605968.2 mRNA upstream 74264 27652785 ~ 27705710 (-) True LOC110525648
XM_021605969.2 mRNA upstream 135610 27714131 ~ 27724002 (-) False LOC110525649
XM_036979758.1 mRNA upstream 135610 27714131 ~ 27724002 (-) False LOC110525649
XM_021605970.2 mRNA upstream 135610 27714131 ~ 27724003 (-) True LOC110525649
TU558571 other downstream 321616 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 698651 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1014182 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 1107968 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 1282640 26279707 ~ 26283169 (-) True LOC110525606
TU559251 other upstream 156475 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 248710 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 1832694 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1900134 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1923732 29502253 ~ 29503391 (-) True LOC110525684

Expression Profile