RNA id: XM_021605986.2


Basic Information

Item Value
RNA id XM_021605986.2
length 4535
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110525658
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28028176 ~ 28044300 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAACAATGAAACAAGTCAAAACAAGAAGAGAGATGCTGTGAAAAGCAAGTATTGCAGTCAGTGGATAGCCGTTGTATTAGTATTTTACCTTTCTATGACATAGCAGAGTATAATTTGATTGTAGAATAAAATATTATACGATGGTCCTTGCGAAACGTCTGAGTTTATTTTGGGGGGTACGTTAGCAAGTTCTTGGCGACATTTAATCTTTAACTAGTTATAGTAGCTAGATACCCAGTAACGTTAGGTTAGTAAGGACAAACACATGCGTTGCATTAATTGACCCTGATAGCTATATAAGGTCGGCTACATTACTCAGACTATCCTTGGCATAGTCACGGTGTGGCCTACGTACGTGGACGGTGTTGTACAGTGAACTGGGGAGGCGTGTCAAGTGTTACGACATAATCAGCTAGAGTCGACATTATAGAGGACGACGAGCTACCGTTTGGCGAGTCTGTCTCTTGAAGTGAGAACAAAGTCGTTGTGATATCTTAACCTGCCAAACTAGTATTTTTGTAAAAGCTTAAAGCTTTGAAAATGTCTTTGGCTGACCAAAGTCAGCAGTGGTATCCCACAAGCGTACAGGTGACCGTGTTCCAAGCCAGGAATTTGAGGATCAAAGGAAAGAATGGAACCAACGATGCCTATGCCATCATGCAGGTGGCCAAAGACAAGTTTTCTACCTCGGTTGCCGAAAAATGTGTCGCACCGGTATGGAAGGAAGAGGCAACGTTTGACCTGCCACTGTTCCACCATGGCAATGCTGAACGCTGCACACTGTACATCATAGTAATGCACAGAGCTCTGGTGGGACTGGACAAGCTCCTGGGACGAGCTGTGATCAACCTACTTGATCTACACGATAACAGCGCCCGCAAAAAGACCGATTGGTACAAACTGCTGGATAAGAATGGGAAGGAGGACAAGGTCAGAGGGGAAGTGATGATGGACATCCAGTTCATGAGAAACAACTTAACAGCCAGCATGTTTGACCTTTCCATGCAAGACAAACCACGCTCCCGCATCGGAAAGCTCAAGGACAAAGTGCGTGGGAAAAAAAAGGACAGCTTCTCTGACTCGGCCTCTGCAATAGTGCCCTCTTTCAGCCAGGTAGTCACTGACAGTGAGGGAGAGGCTGACTCCCACTCAGTGTGCCCAGAGTCCCCTGGGGCAAAGAAAAAATCCAAGCTCAAGTCCCTCTTTGCCCCTAAATCCAACCTGCAGCGCAATGTCTCCCAGTCCATGTCCACACTGGGCACTCTTCCTGAGAAGAACGCATCCCTCGGTGGCAGTCGCTCTTCTGGCCTCAATGTGGATTCTCCTGATGTTAAAAAGAAGTTCAAGTTCCTGGGCCACAAGCGCACAGGCAGCAATGACAGCAAAGTGTCTACAGGACCTTTTTCTCTTCTGGGCAGATCCAAGCAGAAAGAAGACCCGAACATCACGTGCATCAACGGCAATCATGTGTATGCAGAGGAGGTAGAACCCATGTCTGGGTCCACCCTCAGCCTTAACAGCTCTGGTCAGGGCTCAGTGGAGGATGTACGAAGCCACAGGCAACCATCTGACGCCGCTGTAGACTCCCTCAAGGGCGCCCCTGTCAACAGCTACAGAAAGGAGTCTGCAGATAGGGATAGGGCTCTGCTAGAGCAAAGGCGCCTTCaggaagaggtagagaagagGCAGGCTGAGGAGAAGAGACATAATGAGGAGAAACAAAGAGTGCAGCTCAAGGTACTGCAGGAGGAGGAACGCAAGAaacaggaggagcaggagagaagGTTCCAGGAGGATGAGGCAAGGAGGAAGAAGAAGcagcaggaagaggaagaggaccgGAAGCGGCTAGCGGAAGAAAGAAGGCGGCTGAAGGCGGGTGAGCTTCAGAGGCTGGGGGAGGAGCAGAGGCAGCAGGAGGAGGCCAAGAAGGCAGAGGAGCAGAAACAACAACAGGAGGAGGCCTCTGTGACTGAGAGGCTGTCCTCTCTGTTTGGTATGATcaggaagaaggaggagaagaaggaagagCTGCAGCAGAGTGTCGCCAATGAGGTGAGGCCCAACCCATCTCCCAGTCACAGCACCAGAGATTTGGAGGTCCCTGTTCCTGCCCCTCGCCATGCTGCCAACCCATTCAAGGATATTCTCCTCAGTCCAGACCCTCCAATCCCATTTGAGGAAAGCCCGGTGGACCACCAGAAGGGTGTTTGCGGCACCAACACCCCGAGCGCTGCAGTCTTCAACTCCACCCGCACTGCCAAGGTGTCTGCAGTCAAGCCCAGGCCTCACCCAGTGAAGCCCATGAGCTCCATGGAGAGCCATGCTCTCATCAACACCCCAGTGGTGAGAGAGATGAAGACCTATGACAGCTCACTGGGAAATATGAAGGCACCAGGTAAGGTGGAGAGTGGGCCATACACCCAGCTGACCCAGGAGGAGCTGATTACCCTGGTGGTGAAGCAGCAGACGGAGCTCTCCAAGAAGGACTTCAAGATCATTGAGTTGGAGGAGTACATAGACAACCTGCTGGTGCGTGTCATTGAGGAGAAGCCCAGCATCCTGCAAGGCCTCAACTCTCCCAAGAAGGCCCTGTAAGGTGTGAGGAGTGGGCCAGGGAACTgtaggatggagggaaagatttAGGCTTCTACTCCAATATTCCGTTTAGTTTGTGTGGTTTTATATTGCTGTCACTGTGTTGGATCAAGCAATCTCTATGAAGGTCTTGTTTCCTTTGCTCATATGCACTTTTGTCTCCATGAGGAGTCAGGCTGAGATTCAATTTCCAGGTTTCTTTCAGAAACCGGGATGCATGCTGGAATGCTTTTTTTCTATAACTAATTAATGAATCATTCCAGGCTACTATTATTTGACCAGCTTTTGCTCTTTGCTCTTTTGCTCTGCTACTGGAATTCCTTTTTATACTAATTTACCGTATGCGCACATTTCTCGTCATTGGGTTGGTACTTTTTTAATCAACTTTTTAAATCGGTCTCCTCTTCAGGCAGAATAGAACTGGGTGCCCTCGGTATGTTGATGTCCATGTCACTGATGAAATGTATCTGTCCAGGCCTTTGCACAGTGACTCCATGGTGCCTACAATTCAGTGGACTTTAATTAGCTAGTGATACTTTGATATCTGCTCATCCCAAAGCCTTAACACAGCGCTTCAATAATAAGATGCTAGTGTTTTATTTTGTTGCATTCTTAACTTTATCTTCTTTCATTGTTTTCTAGGGTTATGTTTGTCATTCTTTTCTTTACATTATCATGACTTGCCTTGGTGCTGCTGCTATACTACTTGGTGTAATCACAGGAGTTAATCTAATACCAAATAAAATGGATAATTATTGTGGGGCTAGGTACAAGTACATCAACCTTAATCAGAAAGTCCATGTTGTGTGGTAGGAAAATGTCGGATAAACAATGGTCTTAGTGTAGTTCGTTGACGCATTATTGAACCTTTGATTGGAAACACTCATCAGTCAACATTCCTTACTTCCGTTTCTTGCATTCGTTACCTTATTACTTTAGTTGTTTATCCTACCGTCcccttgttacattttgaagtcATGGATAAGTGTGGCCTATTGGTTAAgagtgtttggccagtaaccaaaatgtcactggttcgaatccctcaAGGTGGAAAGAACTGATCATGTTCATGAGCAAGGAGAGACCTGATATtcactttttaaatgtatttatttttatctaCTGCTGTTGAATCACTGATGTACCCACTGTGCAGTCTTTTCTTTCTATTGTAAAATATTTATGCAAATATAAGTGCACACACCATGTCAAATATTTATGCAAGAGTAACTAAGAGTTTGAGTAAGAGCTTCCAATATAATTACGTTTTAAATGGAAATTCAAAAAATGTACAACTTCATATTCATTTCCAGCACAACCCCAACATCAACAAACAGTATGTGAAAAtcgtgtttctatgttttgtagtaaaaatgAGAGCTAAGTGTTTCCAATTACATCAAACAGTTAGTAGGCAATGCCAAataattggtgcacaatgatgtcattggaaaccaCCTTCCTCCAtctttactacaaaacatagaaacgtgccattttcacatatgttgatgttggggagCTGCTACAGATGAGGAATATGAAGTTGAAATTTCCATTTTTAAGCATTATGAATGTTTCAAAATGAACCTTGTCCATGTTAGATGTAATGCCTTTGGTACTTTGAAGTGCTTAATAAGCAGTAGGTTTTGACACTGACAATGGCCTTACAACTTGTGTAAGTCTCAATGTAATCTACTCAATGCATCTTCTGCAACTATGCCTTCGTGTCATGTCATAGCAATAAGAAATCTTGTGAAATATTCACATGTCTATGATTGTGCCTTCAAGGGTTTTATACCTAAGAATTTACTTTTTGTGATTACTGTAAGTCTGGATTCCTTAAGAGCTTTTTGTTTATACTGCTTTTAAATTCAGAGTATTGTATACACTTTGATCGTTCCAATTGAAATAAAGTATAATAaatcttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559403 lncRNA downstream 112441 27915507 ~ 27915735 (-) True G492298
TU559402 lncRNA downstream 112879 27915047 ~ 27915297 (-) True G492297
TU559400 lncRNA downstream 113702 27914275 ~ 27914474 (-) True G492295
TU559394 lncRNA downstream 118406 27909566 ~ 27909770 (-) True G492289
TU559388 lncRNA downstream 131658 27896282 ~ 27896518 (-) True G492284
TU559647 lncRNA upstream 22251 28066537 ~ 28066746 (-) True G492526
TU559648 lncRNA upstream 24469 28068755 ~ 28069035 (-) True G492527
TU559681 lncRNA upstream 84059 28128345 ~ 28129238 (-) True G492556
TU559694 lncRNA upstream 107073 28151359 ~ 28153068 (-) True G492569
TU559719 lncRNA upstream 137210 28181496 ~ 28181863 (-) True G492594
XM_036979762.1 mRNA downstream 160896 27832252 ~ 27867280 (-) False LOC110525655
XM_036979766.1 mRNA downstream 160896 27832252 ~ 27867280 (-) False LOC110525655
XM_021605981.2 mRNA downstream 160896 27834775 ~ 27867280 (-) False LOC110525655
XM_021605979.2 mRNA downstream 160896 27835068 ~ 27867280 (-) False LOC110525655
XM_021605976.2 mRNA downstream 160897 27832252 ~ 27867279 (-) False LOC110525655
XM_021605987.2 mRNA upstream 519 28044805 ~ 28105169 (-) True LOC110525659
XM_036979773.1 mRNA upstream 66682 28110968 ~ 28180719 (-) False LOC110525660
XM_036979772.1 mRNA upstream 66682 28110968 ~ 28180720 (-) True LOC110525660
XM_021605990.2 mRNA upstream 149222 28193508 ~ 28242572 (-) False LOC110525662
XM_036979774.1 mRNA upstream 149222 28193508 ~ 28242572 (-) False LOC110525662
TU559292 other downstream 192874 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 291198 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 783983 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 1161018 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1476549 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 1366929 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1434369 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1457967 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1631037 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 2482400 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile