RNA id: XM_036979772.1


Basic Information

Item Value
RNA id XM_036979772.1
length 3292
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110525660
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28110968 ~ 28180720 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGAGCTCATTCCTCAGAGCGGGTGTCCACAGGTGATTTCATATTGGTTCTTTATCCAATAGTCCCCAGCAATAGAAGTGCAGTTCAGGTGTCCAGAGCATTTGATCTAATAATATAGCAGCACGAATCGCTATTAGAGGCGTATGAGATTTCTGTGGGCGTTTTGGGAACAGAAAGAAGGAAACATTAACTTCATTCTGCTGTATTTTTGGAAGCGACTCGCGCGCAGGGGGTGGAGTGTTTCTGGTCCTGCGCTCTTTTCGGGTATTTTGGTGGTGTCGCCTATGAGTTTTTCACTTGAGATATTCTTCAGGAGAGCACCGTTGTTGGATCTGCAGGTGTACAGACACAATTCGACTATTACTGATTGCTGATCAACTGCCTTGATTTAGGTGAAACCCGAGGCACGGATACATTCATTAAATTCTTCCACTCTTCACCTCGAGCTGGGCAGAACAATTTACACATTTATTCAAAAACAAACATTGGAATGCAAGATGTGCCAGGCTTTACTCCAACTTAAATGGATGCTTCGTCCTCCTGGACGTTTTGTGGGTTTGAGCAGGCAGTGGGTGGCGACCTCTGGTCACGTGATGGCGCTGACAGTAAACCTGATTGGTCCGTCTCCATGGGGCTTTAGAATATACGGAGGAAGAGACTTCAAGAAGGTGATAACAGTTTCCAAGGTCAATGGGGGCAGCAAGGCCGAGTTGGCCGCCCTGCAGCCTGGTGATGTCATCCTGGAGATCAATGGAGAGAACACAGTGGACATGCTCAATGTGGAGGCCCAGAACAAGATCAAAAACTCCAAAACTCAGCTGCAGATGCTGGTGGAGAGGCCTGAGCCCCCCATCCCTGAACAGACCAATGGAACCACCACCCCAGAACAGCTCACTGGACGCTTCCAGGAGGCGGTGCTGGTGAGTCGAGATGAGAACCAGAACTACAGAGGGTACTCCATctccagcccagcctctctgtcaCCTGGACTCTACTCCCCAGAGGCCCCGTCCAGtcctgagggaaagagagagaggctcaCACCCACCGGCACCAAGAGCATCCAGCTGCGTTCGTGGTCTCCAGAAGAGAAGACATCGAGTCACAGACTGTCCAGACCACTGTCACAGGAGTTCTCTTCTCCGGACTTCAGGAATAACTCTGTGACCAGCCGAACCCCCACCCCTCCAGGACATTACTCGCCCCACAGCCCTATTGAGCGCGAGCTGTCTGTCTCCCCCAGACGCAGTTCTGGCTCGGACTTTGCCATGCAGCGGTTTGACCGGGATTCAGAGGTCTacaagatgatccaggagaacaAGGAGTCTCGCACGGCCCCTCGACAGTCCAACACCTTCCGCATGCTGCAGGAGGTTCTGGAGTCTGATGAGAAGGAGGCAACTGTGCGGTTCCCAGGACTCTCGCCCAAACCCACCCCTCCCAAACCCACATCACCCGGGGGCGGAGTCCCCAAGTACCACACCTGTGAGAAGTGTGGCACCAGCATTGTTACACAGGCGGTGCGCATCATGGACGACCGCTTCCGCCACCCAGAGTGCTACACCTGTTCTACACCAGAGTGCGGACTCAACCTGAAGATGCGAGGTCACTTCTGGGTGGGAGAGGAGATGTTCTGTGAGAAGCATGCCCGCGAGAATTACCAGGGCCTTGGCACTGCCCCCTGTGCCACCGTCTCACCCCGCCACTGAGGCTCTAAGCAATAGACCATGGGCTGGGGAACGGGAGTGGGAGTGCCAACACATCAGAGGTTGTGCCTTTTCTATAGCATTTAACTATTCTCTCCAGTTTTCTAATTCATTTACTATGAGGTTTGGATGGAACTTTTCTTTTCCCAGGCCCTCCCGGTTTAGCCCTTATAGATGTATTGTTATCGCTAATGTACAGCTGTatcgggcggcaggtagcctagtggttagagcgttggattagtaaccgaaaggttgcaagatcgaatccctgagctgacaaggtaaaaaactattgttctgcccctgaacaggcagttaacccactaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggttaaaaaaatagatataataatataacatctCATTCAGACAACTTAGTGGGCTACTACACCTGCCACATTTACACCAACTTATTACAAAACAGAACTGGTATATGAATCAGATCAATGACAGAGCGTAACATTTTAATCCTTTAAACAGCATTGAGTCTCCTCCTGACCTGTTCGGAGGAAGGGAAATAAACTCTTCATTTGAATTCCAAGGCATTTGAAAGACAGAAGacatacatatgcaaagggagaACTTTCATCTGTGTCCAAATTTGTACTATATTTGTggttgtgtgcatttgtgtgtgtgcttgcgtgcgtgtgtttgtggaATTCAACTTGAGCGAGAGTTTTGATCATTCCTTTTGAAGTGATGGTTTAAGTGCCTGCGTTGCTGCCATTTCCCCCTGCTATTGGGATCACTATTGAAAGGTTTCAGTGGATTCAGCTTTAGAATGTCAGGCCGAGCCTGTTGGGTTTGTTTTTGCCTCGTGGTAGCACATCAGTTTAGTTGGAATTATGAAATGCGTATTTGCTTTATTGCTTTTTAAAATTTGAAATAAGGGAATATAAAGATGtgatatataaataaaaacatttttgtgaatgtttattttATAGAACAATATATAGTACCGTATCATATGACATGTGTAGGCACAGGGCTGCATGACTTGTAGTACTATTTTAGTGTGAAGAGGTTTGCTGATGCTATTGCTGTATGTTTCTTCACAGCAGCACCCACAGAAAGACAGTGTCACACTTCATAAAAACACATCAATGTTTTTGAAAAATATGTAAGGATAAAACTACATGTATCTTGCTTGGCCTTTTGTATAGTTAGCTATGCAATTGTACCATCAACAGCTTATGTTGTTGAAAATTATGTCATGTAGGCTAAACCTTCCAGCTCCCTGGACAATAAACACCATGTGGACCCCTTCTCATCCTGTAGATCATCCTATAGATGGGTACATTTGGCCTACTGGTCCCACCTCTGTCTATCTACCTGGGAAATCATTGTGGACACACAGTCAGGTTAATTTGTACTATAACCTGGCTGTACTGGGAACAACATTCAGAATTTATAAAACGAGCTTGGAAGTAGGTCTTCTATTCCCTGTAAATTGGTGATGAGCAGATTTTTTTCTGCATTATGTTTTGTAAGAATAAATTGTATCTTTGATGCTCTTGAAATTGG

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23353 PDLIM1_2_3_4; PDZ and LIM domain protein 1/2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559648 lncRNA downstream 41933 28068755 ~ 28069035 (-) True G492527
TU559647 lncRNA downstream 44222 28066537 ~ 28066746 (-) True G492526
TU559403 lncRNA downstream 195233 27915507 ~ 27915735 (-) True G492298
TU559402 lncRNA downstream 195671 27915047 ~ 27915297 (-) True G492297
TU559400 lncRNA downstream 196494 27914275 ~ 27914474 (-) True G492295
TU559719 lncRNA upstream 776 28181496 ~ 28181863 (-) True G492594
TU559721 lncRNA upstream 4850 28185570 ~ 28185808 (-) True G492596
TU560076 lncRNA upstream 76002 28256722 ~ 28257634 (-) True LOC110525663
TU560055 lncRNA upstream 96155 28276875 ~ 28280919 (-) True LOC110525665
TU560119 lncRNA upstream 196247 28376967 ~ 28377231 (-) True G492960
XM_021605987.2 mRNA downstream 5799 28044805 ~ 28105169 (-) True LOC110525659
XM_021605984.2 mRNA downstream 66668 28028176 ~ 28044300 (-) True LOC110525658
XM_021605986.2 mRNA downstream 66682 28028176 ~ 28044286 (-) False LOC110525658
XM_021605978.2 mRNA downstream 243689 27836429 ~ 27867279 (-) False LOC110525655
XM_021605990.2 mRNA upstream 12788 28193508 ~ 28242572 (-) False LOC110525662
XM_036979774.1 mRNA upstream 12788 28193508 ~ 28242572 (-) False LOC110525662
XM_021605992.2 mRNA upstream 12788 28193508 ~ 28242573 (-) False LOC110525662
XM_021605993.2 mRNA upstream 12788 28193508 ~ 28242573 (-) False LOC110525662
XR_002473805.2 mRNA upstream 12788 28193508 ~ 28242573 (-) False LOC110525662
TU559292 other downstream 275666 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 373990 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 866775 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 1243810 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1559341 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 1230495 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1297935 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1321533 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1494603 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 2345966 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile