RNA id: XR_002473805.2


Basic Information

Item Value
RNA id XR_002473805.2
length 3682
RNA type mRNA
GC content 0.48
exon number 21
gene id LOC110525662
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28193508 ~ 28247237 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagagagagggagagggagagggagaggcaggttGTAGAGTGGGACTGCCCACAACATATTGGGCTTACATGCATCACGGAGAAGATAGACCTTTGAGAGGTGTGGTGTTCCCTGGGATTCTTTATCAGAGGTGGATACTTTGGCATCTGCACAAAGATTTGGACATCAGAGACTATCCTGGACCACAACAGATGACATGAAGTCTCAGCATCGTGTGGAAGTCCGGGACCATCTGAATGGCTCTTGTATCGTCTTCTCTGATGATGGTCCCTCCTCCAGTCAGCAGCATCACCTGTCCCCTCCAGACCTGACCCATCAGGTGATGGTCATCTCCCCAGAgctccccaccccccctctcagCCCCTTCCGTTCCACAAGACTGCCACCTGTGGAGCAAATTAAGGTCTCCGAGGTCAATGGGAGTGGCCCTCTTACTGACCCCCTTCGTTTTGGATCATACTATGGCCCTGCTCAATCAAATGgGGGTCTATCTAATGGAGTCCAGACCAGGGGCTCTTCCACTCTGCCGCGGAGGGCTGCTACGAGGGAGGAGCGCCTTATCAAATTCTCTGGGATCGGCCCAGTGGATGAGACAGGGATGCCCATCGCATCCAGATCAAGTGTGAACCAGCCCAAAGACTGGTACAGGAGCATGTTCAGACAGATCCACAAGAAGCCAGAAGAAACTGACGAGGACTCTGAGCGATGGTCTGCTGAAAGGAGCCGGGCCCTCGCTGCTGACTCAGCCAGTGGGCAGGAGACTCTGACCCATATGGACAATTATGGAGCCCTCCCTGACTGGAGTGAGCTGGGGGTTAAAGATACGCTTTCAGACCGATGGGGGCACCCTCCACAGCCCAGGAGCATATTTGACTTTGAGCCTGGACAGAGCACCACATCAGAGGTCCAGAGTCAGCCTCAGGGTCAGCCGGTGCAGAAGCCCCAGCCGCATCCACTACAGCCGTCCCAGCAGCCGCCCCAGCACAGACCCACAGAGGAACCCTGGTCCCCCATAGAGAAGCCGTCTAAGCCATCCGCCTTCGAGGAGTCTCTGCTCTCTGAGCTGAACTGTTTTGAGGCTGAGCTGGACTCAGACATCCAGGGTCTGGAGAGAAGACTTTCCCAGAAGAAGCAGACACGACGAGGCCGGGGTGAGGGTGCCAGAAATGCTGATCCAGGAACTGCTGCAGGGACAgggacaacacaggacaacagCTCCTTGACTGATTCAAAGCAACCTCTCCATTGTCCCATTGTCCCCACATCAGCTGTTGCTCAGAGGGCAGCCCTCAGTCCCACACATGTAGAACGCCTCTCCCCTGCACCTGAAGCCATGGAGTTCCCACCCAAGAGATTGGAGAAGCAGATGAAAGCAGCACGAGCCAAGTTCACTTTCCAGGCTCAGTCACCCAAGGAACTGTCTCTACAGAAGGGGGACATAGTTTACATCCACAGGCAGGTAGACACCAACTGGTTTGAAGGAGAGCATCATGGGAGAGCCGGTATCTTCCCCACAACCTATGTGGAGATTGTTCCTCCTACAGAGAAGCCCACGCCCATCAAGTCTCCAACCATCCAGGTGCTGGACTATGGAGAGGCAGTGGCTCTGTTCTCCTTCAATGCAGACCTGCCTGTTGAGCTGTCCTTCCGCAAAGGCGAGGTGATCTGTGTGACCAGGCGTGTGGATGACAGGTGGCTGGAGGGCCGGATTCCAGGGACTAGCCGGAGTGGCATCTTCCCCACCAACTACGTCCAGGGGAGGAGCAGCCCCGACCAATACCCCCAAACCACAAACGACCAACAATGCTGGCTCAACAATGATGCAGCACCAACCATACAAGGCAGTTTACAACTACAAACCACAAAACAAAGATGAGCTGGAACTGAGAGAGGGGGACATAGTACAAGTGATGGAGAAGTGTGATGATGGCTGGTTTGTAGGTACGTCAAAAAGGACACATGCCTTTGGGACTTTCCCAGGGAACTATGTGACACCAGCGTAACTGCTTCACTCTGCCTGTCCACTCCACAACCACTTGGGTGCTGGACATATTTAGACCAGCTTGCTTTAACCAGCACATCAAATCACTCTAGCAGCCATATGATCAACCCCTGACCCCAacaccccctgtcctccccctttCACCAACCTGGTTAAGTCAGGTGTGCATGTTCACGTCAGCCAGTGACCACAGCTGTTGGCCAGTGTGGCGATGGAGGCAGGAAGACCGTGTTGTTTTGACACCCCACCCCCAGCATGTGTGTTCCATCACTGAATAGACTTGGAGTTTTCACAGACACTGCTTGATTCGGATAGAATTAATGCTGATGATGATACTGTTCCAGGTGTAAAGAAATAACTTTGTCCTCATTGACTACAATCATTTATTATAGCGACAACTCAAATGACATTCCTTCAGTACATTTAAGCTACTGCTTTTATACAGCAATGGACCTCCAGCTATCCTCTTACGGAGTGTTCCCCTTAGCACGCACCTGCTCCTCTTTCTGTCACCCAAGTGCCATCACAGACGCAAATGCCAGAGAATATCATTAGTCTGACGTTCTCTATAACGTAATGACAGCATGAATGTTGCCTTTGAAATGTCTTCCTCCACTTTGATTTCAGATCTATAAAAATGTCCTGTGTGTGTCCAAGGctccaccacaacactgatatgACCGTCCAATATACATGAAGGGATCACTTACTCTATTGTTTTGAACAATGCCATAAAAGATTTGTTACTTAGTTCTGTTAAAAACAATTGTTAAAGCCTGTATAAGTACTGTATGCAGCAGAGCAAACAATGTATTCATGtccttcagtgtgttattgttagCTACTAACGTATTTAATGAAGCTCACAGGTAATGATTCAGCCATTTGTGCAGTTTGTATTTCTGTTGAGAACAGGAAGTGTTGAGTGTCAAAGTGGAAGTTTAATACAATGGAAGAGAAGCGGAGGTATCTTTATGAAGATCTGTTGACATGAATGCAAATGAATGCAACATGGAAAGTCTTGACAAAACAGAAGTGGAGCTACATCAATTGTATCAATTCAGTGGACCCTCTGCCATTTTTAGGCCATGACCCATGGGATAACAAAAAGAGATGCCTCAATTTGCTTCACTTTGGAGCACAGATCTTTTCTAAAACAAGAATCCTACAACGTCAAACCCACAATGGTGTTCAAACATTTCAAAAGGACAGAACAGTAAAATGGACCTGTAGATTGATTCCTAGGGATACTGTACATTTGATTTGGTAGCTCATTTCCACTGAAAACTGTTTGTTttactactgtttctataatCTGTTGCTTTACAAATTAACAAACTTGCTTTGACACATAAATTAAGAGCTAATCGGAGGTGTGCATACAGTTCAAGTGTAACCAATGGAAAATATAATATGGTAAGCAATTAAGCAGTCCTTTCATTTATTAACTTTTACAAACCCCTATTATGTTGCCAACTGAAATATTTCTCTGCTTTGTTCATtcttacccttgtaaaactgcaCCATACCTTTTCTAGCAACAAAATGTACAGGGTTTTAACTATGTATCAGATaacaaatataatatatttcCTTTAATACCAAGCAATTTCTCATCTATGATACACACTATGTAGTTCAAATAAACCATACAGAATGATAAAACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559721 lncRNA downstream 7700 28185570 ~ 28185808 (-) True G492596
TU559719 lncRNA downstream 11645 28181496 ~ 28181863 (-) True G492594
TU559694 lncRNA downstream 40440 28151359 ~ 28153068 (-) True G492569
TU559681 lncRNA downstream 64270 28128345 ~ 28129238 (-) True G492556
TU559648 lncRNA downstream 124473 28068755 ~ 28069035 (-) True G492527
TU560076 lncRNA upstream 14149 28256722 ~ 28257634 (-) True LOC110525663
TU560055 lncRNA upstream 34302 28276875 ~ 28280919 (-) True LOC110525665
TU560119 lncRNA upstream 134394 28376967 ~ 28377231 (-) True G492960
TU560122 lncRNA upstream 137087 28379660 ~ 28379912 (-) True G492963
TU560057 lncRNA upstream 159295 28401868 ~ 28402253 (-) True G492902
XM_036979772.1 mRNA downstream 12788 28110968 ~ 28180720 (-) True LOC110525660
XM_036979773.1 mRNA downstream 12789 28110968 ~ 28180719 (-) False LOC110525660
XM_021605987.2 mRNA downstream 88339 28044805 ~ 28105169 (-) True LOC110525659
XM_021605984.2 mRNA downstream 149208 28028176 ~ 28044300 (-) True LOC110525658
XM_021605986.2 mRNA downstream 149222 28028176 ~ 28044286 (-) False LOC110525658
XM_021605995.2 mRNA upstream 13915 28256488 ~ 28259851 (-) False LOC110525663
XR_005052050.1 mRNA upstream 24244 28266817 ~ 28273722 (-) True LOC118964856
XR_005052051.1 mRNA upstream 34090 28276663 ~ 28309727 (-) False LOC110525665
XR_005052052.1 mRNA upstream 34090 28276663 ~ 28309727 (-) False LOC110525665
XM_021605998.2 mRNA upstream 43935 28286508 ~ 28309727 (-) False LOC110525665
TU559292 other downstream 358206 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 456530 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 949315 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 1326350 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1641881 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 1168642 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1236082 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1259680 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1432750 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 2284113 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile