RNA id: XM_021606003.2


Basic Information

Item Value
RNA id XM_021606003.2
length 1902
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110525668
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28356038 ~ 28370016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTGATCCGTGAATAACACAAGTCTGCCAGGACTAGCAGTCATGGCGCTGTACTGCAGATAATGCCGACTTTTCTTGTTGACCAATGACGTAAGAAATCGCCACGGATTTGCTTATTGAAGGGGTGCAGTCAATTTAAACGCAATTCTCTTGGTTTGGTGAACATCTAAAGAAGCAATCAGGATGGCTGAGCCAGGCTCAAGCAATCCCGGTGGCCCTTCTCACACTCCGGCAACGCCCGGAGGGAGTGGCAGGGGTTTGGTGATGGGACGCCGGCTACCAGCTACTATCTCCCCTGGCCGTCTCCCTTCCATGCGCTCCAGAGACCTCACCCTGGGAGGTGTGAAAAAGAAAACTTTCACCCCTAACATTATTGGCCGCAAAGCTAAAGAAGAGCAGAAGGTTGAGGGTGgacaaaggagggagaggagggagaacgaTCGGGGTCGTGAGCGAGGTGGTAGGGGCGGTCGTGGCCGGGGACGTCCAGAGGTCATCCAGTCCCACTCTATCTTTGAGCAGGGGCCTGCAGAGATGATGATTAAGAAAAGAGGTGGCTATGAAGGTGAGAGAGATGCACCAAGTGTGGGTCCCTCACCCATCATCAACATcaagaaggagaagagggagaccGAGGAAGAGACCAAAGAAATTTTGCGCGCTCTGGAACGAGACAATTTCCTGGATGACCCTCACCTTAGGAGTGATGTAAGGAGCTGTCCTGTCCAGCTGCCCCTGGCTGTGTCAGGGTGGGGATTCAAGGAGGAAAGTGATGTGACAGCCTCCTCCAAACCAGACAAGTCTGAAGAGGATAGTGAGGCCATGGATGGCATAAATGCAGTCAAAGtgAAACAGGAGCCAGAAGATGCGCTAGAGGTAAAGAAAATGGAACCCACTTTCAGACCACCACCTCTCCCTGAGCCTGAAGTTTTATCTGAGCTGCTGGAGAGCTGGAGTCAGACCAAAGAAGAGGAGCTGTTCTTTATTCAGCTTCCTGACTCCCTACCAGGGCAGCCGCCCACCCAAGAGGTCAGGCCAGTGAAGACAGAGATGCAGTCAGAGGATGGACAGTCCATGCTTTTGAAAACGGAATCTCAAgaggagcagcaggaggaaAACAGTTGTCATCTGAGGGacctgcaggagggtctggttgGACGGCTGTTGGTGCGGAAGTCTGGTCGGGTTCAGCTCATACTGGGGCATGTCACACTAGATGTGGCTCTGGGAACCTCGTGTGCTTTCCTCCAGGAGCTGGTGTCAGTTGGAACAGGAGAGGGCCGGACTGGTGACTTGTCAGTGCTGGGACACATCAAACACAAATTGGTCTGCTCGCCAGACTTTGAAGCCCTGTTGGAGAACAGAGTGTGACGAACCATTAGGCAATATCTACACTACAGTGGGGACCTAatccagaaagacacacagaccATGCAGTGCTGTATCAGGTCTATAAGGACAGTAGTACCACAAGCAGACAACACCCAGCTTTTTTCAGGTGTCCAATGTGGTTAATTGGTCCTGGAAAGTCGCAGAATGTGTAATAGAAAGTCAGAGCTCCTACCACTATTTTGTAAGAATAGACAGCTTGTTTACGGaacattgtatttatttttctctctgcagaaAGTGATAGGAGAATATATTTTGAGATGTGTTCTAAAAAAAGATGTGCTAAGTGACTCCAATAAATGGAAGGTACAGTATTCTCTTCATGAATGTGCCAAATTCTAAATGGCCTATTCCAGTGTTATAAGCAGATCCCTATCAGTTCTCTGCTCGTGAGGGATAAGTGGGAAAAGTAATATTGCCCCTGTAGTATCCTGTAAACGCATACCTAAATTACTGGATGTAAGATGACATTTTACTTGGATGTAAGATGAATAAAAAGAACAAAGAAAA

Function

GO:

id name namespace
GO:0006383 transcription by RNA polymerase III biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03026 RPC4, POLR3D; DNA-directed RNA polymerase III subunit RPC4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560055 lncRNA downstream 75119 28276875 ~ 28280919 (-) True LOC110525665
TU560076 lncRNA downstream 98404 28256722 ~ 28257634 (-) True LOC110525663
TU559721 lncRNA downstream 170230 28185570 ~ 28185808 (-) True G492596
TU559719 lncRNA downstream 174175 28181496 ~ 28181863 (-) True G492594
TU559694 lncRNA downstream 202970 28151359 ~ 28153068 (-) True G492569
TU560119 lncRNA upstream 6951 28376967 ~ 28377231 (-) True G492960
TU560122 lncRNA upstream 9644 28379660 ~ 28379912 (-) True G492963
TU560057 lncRNA upstream 31852 28401868 ~ 28402253 (-) True G492902
TU560138 lncRNA upstream 36028 28406044 ~ 28406324 (-) True G492979
TU560141 lncRNA upstream 39049 28409065 ~ 28409279 (-) True G492982
XM_021606002.2 mRNA downstream 3289 28313313 ~ 28352749 (-) True LOC110525666
XM_036979776.1 mRNA downstream 3292 28313313 ~ 28352746 (-) False LOC110525666
XR_005052051.1 mRNA downstream 46311 28276663 ~ 28309727 (-) False LOC110525665
XR_005052052.1 mRNA downstream 46311 28276663 ~ 28309727 (-) False LOC110525665
XM_021605998.2 mRNA downstream 46311 28286508 ~ 28309727 (-) False LOC110525665
XM_021606009.2 mRNA upstream 33068 28403084 ~ 28414473 (-) False LOC110525671
XM_021606008.2 mRNA upstream 41725 28411741 ~ 28414473 (-) True LOC110525671
XM_021606012.2 mRNA upstream 44721 28414737 ~ 28421614 (-) False arid5a
XM_021606011.2 mRNA upstream 44721 28414737 ~ 28425225 (-) True arid5a
XM_021606015.2 mRNA upstream 62343 28432359 ~ 28448181 (-) False dbnlb
TU559292 other downstream 520736 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 619060 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 1111845 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 1488880 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1804411 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 1041199 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1108639 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1132237 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1305307 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 2156670 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile