RNA id: XM_021606009.2


Basic Information

Item Value
RNA id XM_021606009.2
length 1583
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110525671
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28403084 ~ 28414473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGCTTTCGGTTGGCGCGAACTTTAACCGGAAGTGTGCGACTCTTGTTTCTGAGGAGGTTAATGAGCTGTCGACGTCATTTACAGTGTTGTCTAGATATAATGTAAAAAAGTAACATTCTGCGTAGCTAGTTTAATAGAGTACCACATTTTGTGTAGGCTAAGCAAGTATAGGATGTCGGATACGTTGTCTGATGATGCCAGCGGAGGAGATGATGGCCAAGAAGATGTGATGACTCCAGCGGAGCTGATTGGGAAATTGGaagagGCCTGGCTGAATGAGAGGTTCTCTCCTGAGCTTCTGGAGAACAAGTCAGAGATGGGAGAGTGTGTGATGGAGCAGCTGACTCACATGGAGGCCAACCTGCAGCGGGTTAGGAGGGGTGATGTGAAGGCAAGTGTCCACCGCATGGAGATTGACAGGATCCGCTTTGTCCTCAGCAGCTACCTCCGCTCTCGCCTCCAAAAGATTGAGAAGTTTTTCCCACATGTGTTGGAGAAAGAGAAGTCTCGAGTGGAGGGAGATCCTTCGTTCCTGTCTCCAGAGGAGTTTGCTTTTGCCAAAGAATATCTGGCCAACACAGAGACCTATCTGAAGGCTGTAGCTCTGAAACACATGCCCCCCAATCTACAGACAGTGGATATGCTGAAAGCAGTACCAGAGCCTTGTCTGGACTCCTTTGTGTTCCTacgtgtgagggagagacaggaaaaCATCTTGGTGGAACCTGAGACAGATGATCAGAGAGAGTATGTTGTGGATCTTGATGTGGATTCTCAGCATCTGATGCGGTATCGCTCTATAGCACCCCTGGTTTCAAGTGGAGCAGTACAGCTAATTTAACTGTCAAGGTCCCTGCTGACTACTGGCATCCTAGAGGAGGAGGGACTGGGGGGGAGAGTTCACTGGCAGAGGAAAGCTTGGACCTGGGCCCAGGTCTTGGTGGAACCATGGGTCGATCACCATGGCCAGGAGTAGAGGCCAGGATTATTGGAATTGTTTCCACAATATCAGTGAAGGTTTGAATTTCTGAAAGCTGCTCGAGCTTCAACACCACATCAGCAACAATCAATATCTCTCTGCAGCCTCATAACCGACTGACTTTTATTCATGACTCATAGTCTGTGCTTGACCATTTTTGTATTTGTATGCTTTTATGTGTTTTTATTGTTAGGTTTTGGGCTGAGTAATGACTCCTATGACTTGTTCCAATTTAGGTCTGAATAGAAAAGGTGATTGGCGTTAATAACATccagtgttatgaatagtagtaGTAAGGACCAAATTAAGTAACTCCTCACACAAAATAAAAAGTGTCTGTTATTGACAGGCCTAGAGTGCTACCATGTAGAAATTGTAGGCTACCACTATTGGCTAAGAATGATGAGTAAGGTTAACTTCATTGGTCAGGAGAGTAGGGAAGGTGGGATACACCAGATATCATGATAATTAAGGAGGTATATAAACTCAGACACTACTGATACTAGGCGCGTACTAGTTCAGCACCAgtaaagagagaaggaaaagatAACAACAGGATGATTTCAACTTTTTCGAATAAACTGTAAGTTAGTGTTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560057 lncRNA downstream 831 28401868 ~ 28402253 (-) True G492902
TU560122 lncRNA downstream 23172 28379660 ~ 28379912 (-) True G492963
TU560119 lncRNA downstream 25853 28376967 ~ 28377231 (-) True G492960
TU560055 lncRNA downstream 122165 28276875 ~ 28280919 (-) True LOC110525665
TU560076 lncRNA downstream 145450 28256722 ~ 28257634 (-) True LOC110525663
TU560145 lncRNA upstream 11291 28425764 ~ 28425969 (-) True G492986
TU560041 lncRNA upstream 15605 28430078 ~ 28435167 (-) True dbnlb
TU560153 lncRNA upstream 37017 28451490 ~ 28451787 (-) True G492994
TU560160 lncRNA upstream 55515 28469988 ~ 28470245 (-) True G493001
TU560206 lncRNA upstream 100442 28514915 ~ 28515918 (-) True G493040
XM_021606003.2 mRNA downstream 33068 28356038 ~ 28370016 (-) True LOC110525668
XM_021606002.2 mRNA downstream 50335 28313313 ~ 28352749 (-) True LOC110525666
XM_036979776.1 mRNA downstream 50338 28313313 ~ 28352746 (-) False LOC110525666
XR_005052052.1 mRNA downstream 93357 28276663 ~ 28309727 (-) False LOC110525665
XM_021606012.2 mRNA upstream 264 28414737 ~ 28421614 (-) False arid5a
XM_021606011.2 mRNA upstream 264 28414737 ~ 28425225 (-) True arid5a
XM_021606015.2 mRNA upstream 17886 28432359 ~ 28448181 (-) False dbnlb
XM_021606017.2 mRNA upstream 17886 28432359 ~ 28448182 (-) False dbnlb
XM_021606013.2 mRNA upstream 17886 28432359 ~ 28448183 (-) False dbnlb
TU559292 other downstream 567782 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 666106 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 1158891 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 1535926 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1851457 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 996742 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1064182 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1087780 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1260850 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 2112213 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile