RNA id: XM_036979785.1


Basic Information

Item Value
RNA id XM_036979785.1
length 2113
RNA type mRNA
GC content 0.44
exon number 5
gene id tgoln2
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28543021 ~ 28552161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacactctTGGTTTTGGCAGATTTGAACAGTAGGAGGAAGAAGGAAGTGTTTATATCAGGATTTGAGTCATCACCTTTGAGCCAAGCATTATTGGGAACTCTTTCCGTAGTAAATTCTTATATCTGACTAGGTTTGTTTTGCCTCAAAGCTACAATGAAAACAATATCTATGTTGTTTATCGTGCTGGTTTATTTGTCTGGTGGTGTCAGAGGTCCTCCTCAAGGAGACTCAAAGGATCTATTACCAAATTCTCTATCTGTAAGAGATATGCCAGCACAGAACATTTCTGCAAAGGACATTTCAGCACCAGGAGTATCTACTGGAAATAAACCAGAAGCAGGAGTATCTACTGAGAAGGAAACAACACTGGCACCAGCTGGAAAGGAAACGGCACCAGTAGACCCAGCTGGAAAGGAAACGGCACCAGTAGACCCAGCTGGAAAGGAAACGGCACCAGTAGACCCAGCTGGAAAGGAAACGGCACCAGTAGACCCAGCTGGAAAGGAAACGGCACCAGTAGACCCAGCTGGAAAGGAAACGGCACCAGTAGACCCAGCTGGAAAGGAAACGGCACCAGTAGACCCAGCTGGAAAGGAAACGGCACCAGTAGACCCAGCTGGAAAGGAAACGGCACCAGTAGACCCAGCTGGAAAGGAAACGGCACCAGTAGACCCAGCTGGAAAGGAAACGGCACCAGTAGACCCGGCTGGAAAGGAAACGGCACCAGTAGACCCGGCTGGAAAGGAAACGGCACCAGTAGACCCGGCTGGAAAGGAAACGGCACCAGTAGACCCGGCTGGAAAGGAAACCCATGGCACACGTGATGAGGCAGAGAGCAGTCACTTCTTTGCTTATcttgtgtgttcagctgtgttggtgGCAGTGCTCTACATTAGCTACCACAATAAGCGGAAGATCATTGCCTATTGCGTCGAGGGAAAGAGGTCGAGATCGGGACGTCGGCCCAAAGGCGCAGAGTACACCAAGCTGGAACAGAATTAGTGAAGAATGTCATGAAGTCATTGCCAGAAAACTGTGGATATAGGTGTTAAGATGAAATAAGGCACCAAACTGATTCCTGGGGAAAGAAGACTTGCTTGGTTTaatcaaaacatatatattttttttacaaatgggTATTACTTAATAGATGTTTGTCTTTGGATGCTTATTGCATGACTATGCAGAGGATACTGTTGCTGAGAAAGATAAGCATGCTTGTGTTTGCACTCTTGTGTTATTGTGGTACTTTGGGGCATCCTTTGTTCTCAGTCAGTCCATAATACCTTGATGTACTGACTAAATTTGGCAGAAGTAAATTGGGCCTGGGTAGGCTAGTGCGAAAATTAATGCACGTGCAGGGCTCTCCCAAGGATTTGAGCTATCTAGCATGCGAAGGGGGGCATTATGTAATTTATGTTCTTTCTAAAGAgggacatttttatttatttaactaggcaagtcagtttatgaacaaattcttatttacaatgactgcctaccccagccaaacccggacgatgctgggccaattgtgtgcagccctatgggactcccaatcacggccagatgtgattcagtctggatttgaaccaggggctgtagtgatgcctcttgcactgaggtgcaatgccttagaccgctgcgccactcaggaccCAAAAATAGCTGATCTGTCCCAAACTTTTCATGGTCTCAACAAAGCTGTCCTTTGAGGGCTTTAGGTAGGGTAGACATTTTGGCAAAATTAAGAGTTGATTAACATTCCGAGGAATGTAGAAGATAAAAATATTATCCAATTGAAGAATATCTAAGACTGAGCCAGTGTATATTTCTCTCCTGTGGCTGCGTCCTAAATGATGACTATATTTCTACCCAGGGCCTTGTTTCACAGAGAACTTTCCGTACAATGTGCTTTTCAATAGTTGAGTATATGGCAAATGGAAGTAGTCATTTTGCACAGATCCTTTTTGTATGCTGGACCAATTTAAGCTAAATTGGATTAGAAATGACATTTTCTACTATACTTGCCGTGGTTGGTCACTGTCACAACAATgcaaatgtttttcttttttgGTGGGAGTTGAaatgaataaaatgtatttaacaatT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559979 lncRNA upstream 192 28542610 ~ 28542829 (+) True G492827
TU559976 lncRNA upstream 3001 28539809 ~ 28540020 (+) True G492824
TU559932 lncRNA upstream 57806 28484933 ~ 28485215 (+) True G492784
TU559931 lncRNA upstream 58289 28484459 ~ 28484732 (+) True G492783
TU559874 lncRNA upstream 109744 28430062 ~ 28433277 (+) True G492728
TU559940 lncRNA downstream 4678 28556839 ~ 28563758 (+) True LOC110525677
TU559987 lncRNA downstream 12170 28564331 ~ 28565127 (+) True G492835
TU559968 lncRNA downstream 19191 28571352 ~ 28573832 (+) False G492818
TU559970 lncRNA downstream 19191 28571352 ~ 28573832 (+) True G492818
TU559941 lncRNA downstream 27172 28579333 ~ 28581308 (+) True G492791
XM_036979779.1 mRNA upstream 7436 28488558 ~ 28535585 (+) True LOC110526333
XM_036979780.1 mRNA upstream 7868 28488558 ~ 28535153 (+) False LOC110526333
XM_036979781.1 mRNA upstream 8212 28487813 ~ 28534809 (+) False LOC110526333
XM_021606006.2 mRNA upstream 142698 28392387 ~ 28400323 (+) False LOC110525670
XR_002473808.2 mRNA downstream 4644 28556805 ~ 28563324 (+) False LOC110525677
XM_021606025.2 mRNA downstream 851589 29403750 ~ 29407010 (+) True LOC110525680
trnaa-ugc-16 mRNA downstream 1012966 29565127 ~ 29565202 (+) True trnaa-ugc-16
XM_021606032.2 mRNA downstream 1023870 29576031 ~ 29586860 (+) True LOC110525686
XM_021606034.2 mRNA downstream 1037319 29589480 ~ 29594467 (+) False LOC110525687
TU559864 other upstream 169829 28371722 ~ 28373192 (+) True LOC110525669
TU558838 other upstream 751451 27779630 ~ 27791570 (+) False LOC110525650
TU558726 other upstream 1000026 27488596 ~ 27542995 (+) False LOC110525642
TU558727 other upstream 1000026 27536902 ~ 27542995 (+) True LOC110525642
TU556254 other upstream 2858710 25683686 ~ 25684311 (+) True G489447
TU560642 other downstream 437269 28989430 ~ 28990734 (+) True G493450
TU561220 other downstream 1319851 29872012 ~ 29880649 (+) True LOC110525701
TU561339 other downstream 1532423 30084584 ~ 30129769 (+) True G494065
TU562324 other downstream 1769861 30322022 ~ 30344847 (+) True G494946
TU562321 other downstream 1883801 30435962 ~ 30436685 (+) True G494943

Expression Profile