RNA id: XM_021606021.2


Basic Information

Item Value
RNA id XM_021606021.2
length 6332
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC110525678
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28989407 ~ 29010716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGGTTCCCTGAACGCGTTGATCTCACACAGCGCCAAGCGCCGGACAAGAGTGTGATCTATCTGTGAATCGCTCCCAGCTGGAATAGACCAAACCAGAGTCAGGAGCAGAAGGAGTGCGTTATAtagtgtgagagagtgagggaaagagccAATAGAGGTTCCGCGCCTTATGCGTGCTTGGAGGGCACATGACCAGGACCAGTTGGACTATGTTGTCAAGCCGCGAGTAGTGCGTGCCGGAAGCTCGGGGACACGGTGGAGCAAAAGCGACTTTCCTGATAGCCTCATGACTGGGCTGCATTTTCCCTCCGGACTTTGTCTCAGACTTGTAATGGTAGAATTGTTAATAGTGCAGTTATAATACATTTCACCCAGAACTGTGGGAAAttgtttcttttgattttacaACAACGACCAATTAGAATTGTACTTGTGCAGGTTGCCGGTGGATTTCTCAAGAAAGGGATCTTGAAAGGACACTCCAAACTGTGCGTCCTATGACATTTCACAACAGCTGGAATAATGAAGTTGACGAAGAAAATGgttatgtttttatttaaatgtttataCGCCTTGTGATCTCTGTCATAAATTAGATAACGGGTTTGATCAAGTTTGCAAAGAAGAAATGTGCTCAAAAATTTTGGAATATGATATTATATCGAAGTCACATTGCAAGTGAAAgatattttgtattatttgtaaACTAATGCAAACCAAACGCCTGTAGAAATACACGGGAACGAGCAAGGACAGACTTGTAGCCTATGTACGTGCTTCATTGGACATACGTGTAGTGTTCTCTCCCTTTTATTTTCCTCGCAACACTTTAGGTGCAAATTGGATTTTGGAAAACACAATGAGTACTCATTGGGTGAGTGAATAGATTTAAGATCCATTGTCTAATTTTTAAATCAGAACTTTTTAAGATATCAAAATAGCCCATCTGGCCTATTGAGGCATTTCTCATCTCTTTTCGTTTTTTGTCCTCTTTTTTTgtgtggagaggaaggaaaactgAGGCTAACGATAGACTGCCTATGCCAGCTGAGCTGGCTGTCATGCGGGATTGATAGCGGGGAAGTATGTTTGGGCTGGAGCAGTTTGGTTCTCAGATTAATAGCAGAAACCCTGGCCAGTCAGAGAGAAACATAAACCAGCCAAGACTGAACATGAGCTCCCATTACAAAAGCCCTGGCTTTCATGCAGGAGGCCCGCCTGGTGCAGTGGAGCCGGGCATGGGCCCTCTGAACGAGCCTCCGATGCTTGGGCTCAATATGAACATGAACGGTGAGCAGTATGGTGGCTTTCATCCCAGGGGCCACTCAGACATGCATGCAGGCAGCGGActccagcagcaacagcagcagcaaggaCCAATGCATGGATTTTTTAACAACCAGCAACCTCACCAAGGCCATCCCCATGGCCACCAGTCTCACCCTCATCAACACCATCCTCATTTCAGTGGGAACTTTGGAGGCCCAGACCCAGCCTCATCCTGCCTGCATGGTGGCAGGCTGATGGGCTACAACAACAACGGCATGGGGCCCCAGCAGGGCTTTGGAGAGGGGTTTGACCCCCTTGCTGAGGGCCAGGCAGGGGACAGCTtctcccagcagcagcagcaacagcagcaaagATCCAGTAACATGCCTGAGTTCCAGCACCACGGCCCCCCAAGCGGCAACCACGCTGTCCCTGCCCCCTGTCTACCCTTGGACCAGTCACCTAACCGGGCAGCATCCTTCCATggtcttccctcctcctcctcttcctcctcggagACCCATGGTCTGGAGCCTCGACGGATGCCCAATCAGGGTGCTGTGGAGGGATTAGAGTATAATTTCCCAAGCGAGCCCCCAACTGGACATTTTGACGTACCTGTATTTTCTCCATCAGAATCAGACTCTCAGCTGCCCCACTTTGGGCCAGGAAGGCCGGTGGCTGGTGGCAGTTTCCCTGGAAACCCTGCCATGGCTCGGACACCGGGTATACAGGGCATCTCCAAAGGGCACCAGCAGCCTCCCCCACAGCCCCAGCAGCCTCAGCCTCCCCCACAGCATGGAGTGTTTTTTGAACGCTTTGGGAATGGCCGTAAGATGCCAGTGGGGATGGACCCGGGTGTCAGTGCCAGACACACTCTCATGCAGCAGCAGGCTGGTTTGATAGCACGACAGAACTCATGCCCCCCAGGCCTCCCCCGGCCTCCCCAGTCTGAGTCGGGCTCCACCAACACCAACATGCTGGATGGTGGCGTCATGATGCCTGGCCAACACAACCAGTTTGAGTATCCTATTCACAGACTGGAAAATAGGGGCCAGCACCCCTATGGGGACCCCATGTTTAATATGCAACAGCCGGCTCCCCCTCCTCCCGCCCAACAGCCTCCGAATCAGAGGCTGCAACACTTTGACAGTCCTTATATGAACATGGCAAAAAGGCCCAGATTTGAGTTCTCTAACGCACAGGGAGGGGAGAATTGTGGCACGTGGGGCAGTGGCATGCACAATGCACAGGGCATGGagaaccatctctctccctcggcCTACCCTGGCCTTCCTGGTGAGTTCACCCCACCTGTAACAGACGGTTTCCCCCCGGGTCCACTCCAGCATGCCGGGCCTGAGCAGCAGTCTCTGCAACAGCGGCAGAACGCGGCCATGATGATCAAGCAGATGGCCTCTCGGAACCAGCAGCAGAGGATGAGGCAGCCCAGCCTGCAGCAGCTAGGTCACCACGGCGACGTGCCTCCGGGCCCCATGGTTCATGGAGGCCCAGTGGGGAGCATGCCTCAGCCCAACTTTGACAGGGAGAATGGAGGCAGGATGCCAAACTTTGAGGGTCAGAACCCTCATATAACTCAGGAGAACTGGTTCCCCGGGTCCCACCCACCAGGAGAGATCATGTCACGGCGTATGGGGGGAACGGGCGGGGAGGCTGGGGCCCACGACATGGGGCTGCAGCAGAACGGAGCTGGTATGATGTTCAGGCCGGGCATGAATGGGATGGGCATGCAGGAGCCAATGAGGATACCTGGAGATGGGCATGTACAGGCCCTCCACTCCCCTCGTATGCACCCCCAGTTTGGCAACAACATGGGCAACCTCTCCCAGATGCAGTCCCCCGGAGCTGGAGTAGGACACCCCAACGCACCATCAGATAGGCGGCCAGCTGACTTCCCCGCTGGGCCATCCATGGGAGCTCAACCAACGTTTCCTTACGGAGGGACAAACCGTCAAGGGCCACCACATAGCAATCCCCAGGGGGTGAACACCTCACCAGGGAGCTACCCTACTCCATCTGAGTTCCCCCCAGGCCAGCGGTCCTCTGTCAGTAAGCTTGGGGCACTCTCCCTGGGGAACTTTAGCAAAACCAGCACTAAAGACAATGTTTTCGGGCAGAGCTGCCTGGCAGCCCTTTCCACAGCCTGCCAGAACATGATAGCTAGCCTAGGGGCCCCCAACCTAAACGTAACATTCAACAAGAAGAACCAAAATGAGGGCAAGCGAAAACTGAGTCAGACGGAGCAGGACATTAATAGCAGCACAGGTAACGGGACTGGCAGTGCTGGTCCTGAGTATTTTCAGAGCGGCACTTCCCAGAACAGCCAGATGCCTGGCAATGGGAATAGCATCATAAAGCCTGCAGGTCAAAACCAGACGCTGCAGGGGGAAGCCAGTGCCCTCTCCCCAAATTACAACATGGACGCTACCCCATGCAGTGAGGGGAAAGCAGCAACAGggaacgggagagggagagggaggagaaaaaggGACAGCGGGCATGTGAGCCCTGGGATCTTTTTTTCCTCTGACAGCGGAAACCCTGTTGTAAGTCCAGGCCAGCAACCCCCTTCAGCTGGCgttggggagaggggtgggggtacGCCCCATGAGAAACCCCTCCCGTCCCCCTCCTGGGGAAAGGGAGATGACCAGATGCTGGGGGACCAGGCAGACCTGATGTCTTCTCTGGACAGTGGCATTCAGAGTGTCACCAAATCTAACAGTAGCTCACCGCACGTGGACCTTCCTGACGATGTCAGCGCCCACTACGTCAATGAGGATGAGGTGTCCTCTAGCTCAGATGCAGGAGGTGCTCCTGTCACCAAGCCCAACCGCAGTCCGCACATCACCGTCTCACCCAAGCTGCAGAGGGGGGAACATGGCCTGATGAATGGGCAGAAGCCCCTAGGCATGCAGGGCATTACCAATCACACTACCTCGACACCCGACAGCTATGGACTGAGTGCTGGTGGGGGCACGGTGGGCAACGGAGTCGGTCACCCAGGCACACCTGGGATGGAGCAGGTACGCACCCCATCCAGCACCTCTGGCCAGGATGACATCCACCCTCTGGAGATACTGCAGGCCCAGATCCAGCTGCAGCGCCAGCAGTTCAGCATCTCAGAGGACCAGCCCCTGGCCATGAAGAATGGTAAAAAGAGTGGCGACTGTCCCTCACAGAACGAAGACAATGAGCTGGCGAGCTGCAGCCCGGATGCTGGGAAGGGCTCAATGGGCACTATTGACCTTGACACTCTAATGGCAGAGCAGCACGCCACCTGGTATGTGCCCAGCGACAAGGCCATGATGGATGGGCCAGAGGATGACAAGGCCATGGCACCCTGGGAAAAGACTAagagccagaataacagcaaagaaGAGTCGGAGCTGTCTCAGAGTAAGGCTGGAGTAGGGGTGGGGGCCCAGGGGCCCGGAGGGGGCAATGGGGGGAGCCACCTGCAGTGCCTGTCCGTCCACTGCACAGATGAGCTCGGGGACAGTAAGGGCCGAGGGGGGCCCGTCTCTTCCTGGCGCTCCCTGCACTCCGACATCTCCAACCGCTTTGGGACCTTTGTGGCGGCCCTGACCTGAACACAACCAGGCCAGGAGATGGAGGGAACAtcggatgaagagagagagagagggagagagggagggagggagggagagtcagagTCAGTGGCAGATGACAACTATGGTGTTGATGATGAGGCCACTGCATCGGCTCTCGCCTGTTCAGGGAGAGAAAGACAtatacacacccatacacacttgtacacacacatcaacacatacacactcatactcgcacatacacactcatgctcgcatacacactcacacacaaaagcAATCTTGGATACACACTCACTCATGCATCGCTGGACTATACAGCTTGGGCTCTAGTCAGTGGTGACCACATCTGGAAAACCACAAATcaatctatttttattttattttatttttaagaaaAAAGGAGAAATGTCAATGGAGGAAAATaaaaaactaaaactgaagaaaCAATAAGACAAAAATGACCTTGGCTGTATTGGAATACCAGTGTTGAATCTCCGTTTGGTTATATTCTCTAGATAAAAATAGCCTCATAATATTTGGGACCTTTGTGATCATCCTCACCACTAGAGCTGTCCCCTGTACCTTTACCCTCTAGCCATGGTTCTCTCTGCGGCCTGGAGATGGTACTACCCACTATGCCTGCCCCCAGACTAGCGTATAGATCACTGAGCCCAGGCCTCGGTCTGGCAGAGCCACCCTGACCCATACTGACCCGTTGAGGGACTTTGGTGGTCTTTGTCAGCCAGAATATGGAGGATGTGTGAAccagcccttcctccctcccatggCTCTCAGGTGaatagagggaggagagcagCCCTGTCACCAGGACCTCTCCCCTCCAACCAAACCTCAGGCCTGGGAAGCCCATTGTCAGCCAGAGACACAGGAACCTGATGAGATTTTGGCCCTTTGAGACACCAAACCTCACAGCCTCAGCAggctacaaatcaaatcaaaatcctGGTTCAATAGAACTGACCTGAACCCTGaagcagggggagggagatggagagatacattttttgtttttggGTTGGAAAAGGTATCAGCAAAAAGGGATTTCTTTATACATATTCCTCTCTTTCACTTCCTTCCTCTTGTATTGAGCTTGGGCTCCAACACAGGTATACAATACAGCCAGTGGAAATAGTAGGGGATGTCAAAGAACAATTTAATAAGGGAAatggaaaaaaaaatattggtatTGCACATGTAAAATAAGAGAACATTTGCTGTGTGTTAGGCAATCTTGTAATCTTTAAATAAAGCTTCTGTTGGATTTGAATTTCTGAAACAATAGATGGAGGACTGTGACGGCAACGTGCGAACTGAgtttcttttttgttttctttttttaataaTATGTAAAGTGCAGTCGTCTGTTTTCCTGCATATTGTATATATCTGTATATGTTTTATTGAGTAACTAAATAACAATAAATATGACGTTAATGGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561408 lncRNA downstream 3480 28985711 ~ 28985927 (-) True G494130
TU561400 lncRNA downstream 18196 28970906 ~ 28971211 (-) True G494122
TU560611 lncRNA downstream 40270 28948864 ~ 28949137 (-) True G493419
TU560603 lncRNA downstream 50929 28938251 ~ 28938478 (-) True G493411
TU560498 lncRNA downstream 155864 28833311 ~ 28833543 (-) True G493313
TU561432 lncRNA upstream 29695 29040411 ~ 29040803 (-) True G494154
TU561427 lncRNA upstream 60431 29071147 ~ 29071635 (-) True LOC110526490
TU561484 lncRNA upstream 139023 29149739 ~ 29149956 (-) True G494205
TU561487 lncRNA upstream 146677 29157393 ~ 29157612 (-) True G494208
TU561492 lncRNA upstream 153891 29164607 ~ 29164809 (-) True G494212
XM_036979786.1 mRNA downstream 433394 28552264 ~ 28556013 (-) True zgc:153044
XM_021606020.2 mRNA downstream 433814 28552264 ~ 28555593 (-) False zgc:153044
XM_036979787.1 mRNA downstream 435016 28552264 ~ 28554391 (-) False zgc:153044
XM_036979778.1 mRNA downstream 521542 28455590 ~ 28467865 (-) True ube2d4
XM_021606018.2 mRNA downstream 521602 28455590 ~ 28467805 (-) False ube2d4
XM_021606022.2 mRNA upstream 12492 29023208 ~ 29070012 (-) False LOC110525679
XM_021606024.2 mRNA upstream 12492 29023208 ~ 29070012 (-) True LOC110525679
XM_036979791.1 mRNA upstream 60000 29070716 ~ 29269113 (-) False LOC110526490
XM_036979789.1 mRNA upstream 60000 29070716 ~ 29398888 (-) False LOC110526490
XM_036979790.1 mRNA upstream 60000 29070716 ~ 29398888 (-) False LOC110526490
TU559292 other downstream 1154105 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 1252429 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 1745214 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 2122249 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 2437780 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 400499 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 467939 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 491537 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 664607 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 1515970 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile