RNA id: XM_021606024.2


Basic Information

Item Value
RNA id XM_021606024.2
length 3757
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110525679
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29023208 ~ 29070012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCATCGCCACTCACCAATCACAGACGGTAAGGGGCGGAATAAGAGAGTTGTTcataaaggcacatgacatcagCCTTAATACGTAGCCACAGCTAAAAAACTACGATGGTTCTCATCAAGGAATAccgtGTGGTCTTACCCTGTACAGTGGAGGAGTATCAAGTGGGGCAGTTGTACTCCGTAGCAGAGGCCAGTAAGAATGAGACGGGCGGAGGAGAGGGCATCGAGGTCCTTAAGAATGAACCCTATGAGAAGGAGGGCGAGAaaggacagtacacacacaaaatCTACCATCTGAAGagTAAAGTCCCAGCGTTTGTCAAGATGATAGCTCCTGAGGGCTCCCTGGTCTTCCATGAAAAGGCCTGGAATGCTTACCCTTACTGCCGAACCATTGTAACGAATGAGTATATGAAAGACGACTTCATCATTAAGATTGAGACATGGCACAAACCTGACCTAGGCACAGTAGAAAACGTGCACAAGCTGGACGTGCCCACATGGAAGAGTGTGGAGGTGGTTCCCATTGACATCGCAGATGGGGAACAAGTGGCCCCTGCTGACTACAAGGCAGATGAGGACCCTGCTCTGTTCAAGTCAGCTAAGACTGGTAGAGGACCCCTGGGACCCAACTGGAAGAAGGAGCTGGTTAGTAAGGCTGACTGCCCGAGGATGTGTGCCTACAAACTGGTCACTGTCAAGTTCAAGTGGTGGGGCCTGCAGAACAAGGTGGAGAGCTTTATTCACAAGCAAGAGAAGCGCATCTTCACTAACTTCCATCGCCAGCTGTTCTGTTGGATTGACAAGTGGGTGGAGCTGACTATGGAGGACATCAGGCGGATGGAGGCGGAGACCCAGAAGGAGCTGGAGGAGATGCGTAGGAAGGGCTCTGTTCGAGGCACGAAGGCTTCAGACGAGTAGCTGCTCCAGGTGTAGGTCTGAGGAAGGCTGTCTTCGCAAACAAGGTCAAGTACGGGGAACCAGTGCTGCCGATGCCGAATGAGATGGAGGGTTTTAAACAGAGATGAAGAGTGAAGATGATGAAGAATTTCGACGTGTGCTCCCTGCGTGCCACCTTTTTATCTTACTGATTCAGGATGAGGAGGACGAGGGCTCTGCTCCAATCGCTCAATAGACCAGCACCCTGACCTACCTGCATCCAATTATAGACATTCTATCCACAGAATAATTGATTTGTAGAAAGTGACACGATCATAGCTTATAATTTTGATCTCCTAAAGACATTATCAAGAAGCAATGACCTCAGTAAAGCcagctaccaccaccatgttgtTGATAGACTAGTCCCTCTATCTTCTCTTGATAGACGCTTTGAGGGCTGCTTGGTTGTTGAGAGATTAATATTTTCAAAGCATTTAATTGGCATGATTCCCTTATGGCAGGTGTTGGACCTGTGTTTTGTTATTCCAGTCGAGTAGGATCGTTCCTCTGTGGTCTGTTGCCTTGCCCATTTCTTTTGTTTTCCTTTGTATTCGTTGATATTTTCCCCAGATCATTCCTTTCATGTCCTCTTCTAGCTGTTCATAACTCTATGGTTTTCCATTAGCTGGCGAAAGAGATCCTGTCAGTGTGTTCTCCAAAAACGTGTCCCTTCCTGCCATGGCGTTCATTAAGAGATTACTGACACCCTTGGCACCTGTGCCCATCCTAATATTTCCCCCTCCCTCTGCATCTTATTAACACTCTGATGATCTTGTCCACACAGGTATTTCACACTCACTCCCATGCAaattaacacaaacacacactcatatgcACATGTAGGTGTGAATGCCTTTGTGGTGGCTGATTTCTTCTAAGCTCAAGCTGGGCAGATCCCTGCAGGATCCTTCAACTGAAGGGAAGTGGCTGTTGGAGTGTTTGGAGCTGTCACTGTTTTTCCCACACTCCCCATTCTCCATACGCTCACACTCAGTCAATCCGCTCCTCCCCAGCGGATGTCCCCAGAGCGAAACCGCACTGAAAAACAGTCACAGATGGCGCTACACCCTTCCAGTCTCTGTCACGCACTGCTCACCCCACCCTGCAGTCCACCACCCCAgtagcctgcctgtctgtctgccttattCCTGTGGATCTCTGGGACCGTGTTCTGCTGCAGGTTGTATCCTGCTGAACAGGAGCATCAGGTCAACAGACACCCAGCACCACCCTAGCCCAGACCAGGCCACCACCCCAGACCAGGCCACACCTGACTGGGCCTGTTTACCGTCGCAGCTGCCTCCCTACCTACTCACTCAGCACTACACTGCCTTACTGTACCTATACAGTACCCCCACATGACATACTGTACCTCCACTCTGTCATCTACCCCTTTACCTATTTGCCAGACTGGGGGTCTGCTTCTGGGTGCTAACGAGCACCACCATGCCTTCTGGCTCCACACGGGCACCAGTTAGGAACCACTCCGTAGTCTTTTAGGATTTACTACAGGGACACTGATCAACAGAGGGTAGAACAGGGATGGTCCTTGGGGGCCTGAGTTGGTCTCTCACTTGcaccagctaacacacctgactccactAAACAGCTAATCATGCAAGAATTAGAATGCAATTTGTTTAATCCGCTGTgcttgctagggatggggggtgaCACTACTCtggcccctgaggactggagttgcccatccctggggCAGATGAAGGGCTTGATTGGTTTGCAATGGCTTTAAGATATGTTTTAGTTGAACCACACAATGTGCTCAAGGTCCTAATGCATGTTTGTTCTATTGAACTGTGGTGGGGTGATTATTCCCTGCCGTGATACTGTACTGATGTAGGCAACAGCACTCCCCAGCAGCAAGCCGGTCGGACAGTTCCGTGCTGGAGCCCGAATGCTACTTCCTGTTTAAGCACCAAAGTGCCTTCATGttattgtgtgcatgtctgcGTGCTTGTGGGACAATAAAGAATGCATGTGTATCTTACCTTGTCATTCAACCTCAGCCATTCTGCCTATTTTTATATATAGACATGCTTGCAGCTAAGATGGAtggaatatttttttatgaagagCTTAGCCTTGATGGTCTATTTTTATTGGGAAAGCCTTACAGGGGGATGTGAGAACCTTAGTGATTGGTTTAGTGCTCACCCAAAGAGTGTGCATGGCTCTGGGTGATATCATTTGTTTACATGTGTTGTTTACTATACACACAATTCCCCAGGGGCAATACTGACTCACCAGCAGATAGATGGCCAACTGAACTCTCCTGAACCCCACAACTGAGTAGAGATATCATTAGTACTCATGTCCGTTTCAGTTGTGAGTGACTGACAGGACATGAAAAGTCATGGCCATAATGGGACTGATGAAGTCCAATTTCCCATCAATGACAGGTTTATGCAGTCAAAGAAACTGTAAGAGTGTTGAATATGACTAATGTCTTAAGATCTGTCTACAACCTCTGCCTTATATTGAATAGAAAACTTGTTAAAACTCCATAATGCAACACCACTCTTGTAGCGAACCATTGTTCTATGATATCTGCACTGTGGGCAAAGGACAGCGGGGAAGTAGTCTTTACAAGAAACTGTACAGTGTGGTCATGATTTATGAAATGTACTGTTAAGTTTCTAGAAGAAAATGCTTTTAAATGTTTCTGATCATCTGAAATTCAGGGGACATGGTAGTGAATGTATTTAATTTAGCCTTTTCCATTTGTAGAGTTTTGTGCCGCGGGAAGTCTACATAATGCATCTAATTACTGAATTAAATGTCAACGTACTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561396 lncRNA downstream 32475 28989410 ~ 28990733 (-) False LOC110525678
TU561397 lncRNA downstream 32475 28989550 ~ 28990733 (-) True LOC110525678
TU561408 lncRNA downstream 37281 28985711 ~ 28985927 (-) True G494130
TU561400 lncRNA downstream 51997 28970906 ~ 28971211 (-) True G494122
TU560611 lncRNA downstream 74071 28948864 ~ 28949137 (-) True G493419
TU561427 lncRNA upstream 1135 29071147 ~ 29071635 (-) True LOC110526490
TU561484 lncRNA upstream 79727 29149739 ~ 29149956 (-) True G494205
TU561487 lncRNA upstream 87381 29157393 ~ 29157612 (-) True G494208
TU561492 lncRNA upstream 94595 29164607 ~ 29164809 (-) True G494212
TU561508 lncRNA upstream 127848 29197860 ~ 29198198 (-) True G494228
XM_021606021.2 mRNA downstream 12492 28989407 ~ 29010716 (-) False LOC110525678
XM_036979788.1 mRNA downstream 12492 28989407 ~ 29010716 (-) False LOC110525678
XM_036979786.1 mRNA downstream 467195 28552264 ~ 28556013 (-) True zgc:153044
XM_021606020.2 mRNA downstream 467615 28552264 ~ 28555593 (-) False zgc:153044
XM_036979787.1 mRNA downstream 468817 28552264 ~ 28554391 (-) False zgc:153044
XM_036979791.1 mRNA upstream 704 29070716 ~ 29269113 (-) False LOC110526490
XM_036979789.1 mRNA upstream 704 29070716 ~ 29398888 (-) False LOC110526490
XM_036979790.1 mRNA upstream 704 29070716 ~ 29398888 (-) False LOC110526490
XM_036979793.1 mRNA upstream 341192 29411204 ~ 29483533 (-) False LOC110525681
XM_036979794.1 mRNA upstream 341192 29411204 ~ 29483533 (-) False LOC110525681
TU559292 other downstream 1187906 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 1286230 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 1779015 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 2156050 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 2471581 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 341203 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 408643 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 432241 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 605311 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 1456674 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile