RNA id: XM_021606035.2


Basic Information

Item Value
RNA id XM_021606035.2
length 1996
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110525687
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29589480 ~ 29594567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTACAACAGGTCTTGCACCAGGGCCCCGGTCAAATTGAGGGTGTAGTGTATTAGTACGGAGTGGAAATCCAATAGCTTTTTAAACGTCGACGCGGCCCGTTTTCCCGTCTTTATGTGGCACCATCTTCAAGTAAAACGCGTTCACTGAGGTGTGAAGAACGGGTCCGCGTTCCACTAGTCACCAGTAgtgttaactcctcctccacaaaTCAGTGGCTTGCGAGGGCTAGCTCTACTAGTACGCTTTAGCGTCTTTTTCCACATAGATAGTTGCGAAAAACAACAGCAGTTATGTTTACCCTCTCCGAGTTTATGGTAATTGCAGCTATGTTGTCCGCAACAGCGTCAGGTTATTTTGTAAGCATAGACGCTCATGCAGAAGAATGTTTATTTGAACGAGTCAACTCTGGTACCAAGATGGGCCTTATGTTTGAGGTGGCCGAAGGCGGTTTCCTTGACATCGATGTGGAGATCACGGGTCCAGATGGGAAGCAGATTTATAAAGGAGACAGAGAATCCAGTGGAAAGTACTCTGTGGCTGCCCATATGGATGGCACATACAAGTTCTGCTTTAGCAATAAGATGTCCACCATGACGCCCAAGATTGTCATGTTTACCATTGACATCGGAGAGGCCCCCAAGGGAGACGGCATGGAGACGGAAGCCCACCAGAACAAGCTGGAGGAGATGATTAATGAGCTAGCAGTTGCCATGACGGCAGTAAAACACGAACAGGAATACATGGAGGTCCGAGAGAGAATACACAGAGCAATTAATGACAACACAAACAGCCGAGTGGTGCTTTGGTCCTTCTTTGAAGCTCTTGTGTTGGTAGCCATGACCCTGGGACAGATCTACTACCTGAAGAGATTTTTCGAGGTGCGGAGAGTTGTGTAAAACATGGCTTTTTTTCCAACTCCAACGTGAGTCATCAATAACTTGAACCATTAGCCGCACCATACTACAAAGTTGGAAATCAAACAACCTCTGAAAAGCCTTTTCCTTATCCAATCTCATGTCTGTTTTCCTCTTCTCGCACTTCAGGCCATGGTACAATGTATGTTTTTCCAATCGAGGAGAACTGTCTTTGCATTGACTCCTCAGACTTTGATATCAATAGCACTGAAGAGGGTATTATACATTTTTGATCAAGAAGAGTATTTATGCATTCAAACCCACTGCCCGAAAACTATGCCAGGAGGAGGTTGTGCACACATTAAATACAACACTGGGCTTGGAATGATAGTTAGACAACTGTTCAGCTTGCTCTAGATGTTTTTTAGGGAGTATATTTTGTTGTACAAATAACTTTTGTTTTAACACCTACCGTGCCAATCAGTCACAGTATGCACAATGCATATTTAATGGAAAAAGTAATGGCATATAATCgtactgtatgtatttaagaCTGTTACATTTTGGGGTAAGATGCAGAATAAGAAAAGCCTTGGTGTGAGATCTGAGCTATTGTTGCCAGTTTGAAGTAGTTGCTTGAGCATTTATTGTTCTAGTATTGTACTTTATCAAATGAGGACAATTTTGTACAGATTTTATTCTACTTTGTATTGGTAGTTATGTTCAATGTTTATGCTGGGTTAGCAGAGGGTGACATTGGTCACAACAGATACAGAGCTCAGACTTTCAGAGTCAAATTAAAATGTAGATGCATTTATGACCCAAATCCAGTTCATAATAAAGTTTTTCCTTGTCCTCTTGAGATTGATTATTTTGTAATTAATTAGTACAGTAGTTTTATATACTCTCCCATGGGTCAGCAGAACCTTTTCAAACTCCAGTAAAGCAAGTAGGGGGAAAATGTTCATACAAAGTAAAACACCTGCTTTTTGTGAGTTTCTCCTTAAATCCAAGACTAATAATAAAATCATTGTATTATGTCTTGACTCACTATGGGTTTAATGTTGTTAGTGATATGCATATTGAAAGGTGACTTGTTAATATCTGAATTAAATGAATCCATTTGATGGGtgtttattc

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K20347 TMED2, EMP24; p24 family protein beta-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560983 lncRNA upstream 56794 29472037 ~ 29532710 (+) True G493749
TU561018 lncRNA upstream 59296 29526792 ~ 29530208 (+) True G493779
TU560981 lncRNA upstream 118487 29470739 ~ 29471017 (+) True G493747
TU560980 lncRNA upstream 119543 29469734 ~ 29469961 (+) True G493746
TU560977 lncRNA upstream 121734 29467532 ~ 29467770 (+) True G493743
TU561080 lncRNA downstream 17694 29612261 ~ 29612480 (+) True G493835
TU561092 lncRNA downstream 31382 29625949 ~ 29626207 (+) True G493847
TU561098 lncRNA downstream 40350 29634917 ~ 29635374 (+) True G493853
TU561103 lncRNA downstream 50709 29645276 ~ 29645533 (+) True G493858
TU561121 lncRNA downstream 73292 29667859 ~ 29668146 (+) True G493876
XM_021606032.2 mRNA upstream 2644 29576031 ~ 29586860 (+) True LOC110525686
trnaa-ugc-16 mRNA upstream 24302 29565127 ~ 29565202 (+) True trnaa-ugc-16
XM_021606025.2 mRNA upstream 182494 29403750 ~ 29407010 (+) True LOC110525680
XR_002473808.2 mRNA upstream 1026180 28556805 ~ 28563324 (+) False LOC110525677
XM_036979785.1 mRNA upstream 1037343 28543021 ~ 28552161 (+) True tgoln2
XM_021606037.2 mRNA downstream 3491 29598058 ~ 29602770 (+) True gtf2h3
LOC110526542 mRNA downstream 13166 29607733 ~ 29609559 (+) True LOC110526542
XM_021606038.2 mRNA downstream 21943 29616510 ~ 29621427 (+) True psmd9
XM_021606039.2 mRNA downstream 43227 29637794 ~ 29646752 (+) False LOC110525691
XM_036979802.1 mRNA downstream 43573 29638140 ~ 29646752 (+) False LOC110525691
TU560642 other upstream 598770 28989430 ~ 28990734 (+) True G493450
TU559864 other upstream 1216312 28371722 ~ 28373192 (+) True LOC110525669
TU558838 other upstream 1797934 27779630 ~ 27791570 (+) False LOC110525650
TU558726 other upstream 2046509 27488596 ~ 27542995 (+) False LOC110525642
TU561220 other downstream 277445 29872012 ~ 29880649 (+) True LOC110525701
TU561339 other downstream 490017 30084584 ~ 30129769 (+) True G494065
TU562324 other downstream 727455 30322022 ~ 30344847 (+) True G494946
TU562321 other downstream 841395 30435962 ~ 30436685 (+) True G494943
TU562306 other downstream 923409 30517976 ~ 30523383 (+) False 4ebp2

Expression Profile