RNA id: TU561850


Basic Information

Item Value
RNA id TU561850
length 1154
lncRNA type read_through
GC content 0.42
exon number 3
gene id LOC110525693
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29650203 ~ 29654088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGGTAGCTGGGTATGGACAACGCATATTTTTAACACAGTCCAATATGTAGCCAATTCAATTAATGCCACCGCAGTAAAGCAATGCTTAGAAGCTAGGCATTCTCTGTGGGAGAGAGCGcaaagatgagaaggagaactGGAGGAAATCCAAGACAGCAGAATGTCAGACTgcaaggaagagaggggagaagacaggagaacatCTCGAGAGGGCAGGCCCACACAAGACAAACATGGCATATTAATCTCAAGCCAGAGGAACTAGTCCTTGCTAAACATAAAGATGCCACTTCTGACATGTCCTGTGTGTATAAATTGTAAGACACTGATATTTTCCCATCACTGAAGGCAATCATACAGACTGTGCTGACCATCCCAGTTAGCAGCTGTGAGAGATCTTTCAGTGCATTAAGACATCTACATACCTGGCTTAGGAGACCAAGATAGAATGCCCCATGACAATTGACAAGGATATTCATACTGTAATACTAACACACTTGGGAAAGAGTGAAGTCATAGTCAGGTTTGCACCTACAGTTTAATTTCTAATTTTTATGGATGGACTAATCCTAGTACTGTGTAATATAACTAGCAACCATTGTGAATATTTAGTTGGAGAATGGATTGTATGTTGGTACATGTGTGTAAAATTGTGAAGTGTTATTACTACAGGGGTGTTGGAGGGGGTGTATTTGTTTTTGTGTAATTACTTGGGTAGAAATATTGTCAAGTAGTTAATTGACCTTGGACCTTTCAACATCCACGCGATTAGGAATATACCATCTTCATAGTCATGTTATGCTTGGTTCAATAGCTATTGATGAGGAAACCGAATACCCAATATAAAACTAATTTTACCTCTGTAAGCAGGACACCACTTTTAGCCCCAGAGACTCAAAACCACAAACAGATCGACCAAAGGTATGGATCCACTTTCTCCAAGAATCATACTCCCATTGGGCCAGAGTCTTCCTGATCATTGGAGTGAGGCTCAGAAGCCTTCACACCACCTGACGACCCAGGTTTTTTCTCACTTTCGTCAGGATCAATTTCAAGTTCACTGTCCGTTGACAGCTCAGGGTCTTCAGGCACGTAACATGCATTTTGTCTCTCCCGTTtcctaccccattgaagttgaacaTTTAAatgggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561836 lncRNA downstream 13356 29636636 ~ 29636966 (-) True G494517
TU561835 lncRNA downstream 13796 29636281 ~ 29636526 (-) True G494516
TU561834 lncRNA downstream 14840 29635128 ~ 29635482 (-) True G494515
TU561830 lncRNA downstream 17883 29632237 ~ 29632439 (-) True G494511
TU561826 lncRNA downstream 21535 29628452 ~ 29628787 (-) True G494507
TU561853 lncRNA upstream 4261 29658349 ~ 29658624 (-) True G494530
TU561860 lncRNA upstream 13194 29667282 ~ 29667537 (-) True G494537
TU561863 lncRNA upstream 19588 29673676 ~ 29674225 (-) True G494540
TU561867 lncRNA upstream 23414 29677502 ~ 29678117 (-) True G494544
TU561869 lncRNA upstream 25994 29680082 ~ 29680686 (-) True G494546
LOC110526522 mRNA downstream 53513 29595416 ~ 29596809 (-) True LOC110526522
XM_021606028.2 mRNA downstream 74724 29526783 ~ 29575598 (-) False LOC110525685
XM_021606031.2 mRNA downstream 74724 29526783 ~ 29575598 (-) True LOC110525685
XM_036979799.1 mRNA downstream 129342 29502192 ~ 29520980 (-) False LOC110525684
XM_036979800.1 mRNA downstream 129634 29502192 ~ 29520688 (-) False LOC110525684
XM_021606056.2 mRNA upstream 51971 29706059 ~ 29754385 (-) False LOC110525694
XM_021606052.2 mRNA upstream 51971 29706059 ~ 29754400 (-) False LOC110525694
XM_021606053.2 mRNA upstream 51971 29706059 ~ 29754401 (-) False LOC110525694
XM_021606054.2 mRNA upstream 51971 29706059 ~ 29754401 (-) False LOC110525694
XM_021606045.2 mRNA upstream 51971 29706059 ~ 29754402 (-) False LOC110525694
TU561743 other downstream 146931 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 166976 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 235008 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 1815020 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 1913344 27734996 ~ 27736978 (-) True LOC110525653
TU561865 other upstream 21235 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 872598 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 891314 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 921030 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 2007305 31661393 ~ 31661618 (-) True G496772

Expression Profile