RNA id: XM_021606055.2


Basic Information

Item Value
RNA id XM_021606055.2
length 8067
RNA type mRNA
GC content 0.51
exon number 27
gene id LOC110525694
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29706059 ~ 29754403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCTTgtttaaaattatatatatatatatatatatagcaaatGGATCTTATAACCTATTGCGTGTTCGGATAACAATTCTGGTAACTTATTGTTCAATTTGTGGTCCAGTATtagatacttttttttttttactgtctaAAGGGGCGAGACCATTTTACGTCATTGTATCACTCAATCAGCACCTCGGTCGGACTCAAAACAGAAGGCTTCGGTTGGGGAGACAACTCAGCAGTGTCTGTGGGATTGTTTCTATCTAGCTTTTCGTCAAAGAAACGGTTCATACGAGAGTGCCACAGGTAAGGAAGAGACTTGCATCCGCTATCTCACGTTAGCGTCATGGTTAACCGGGCGGGCCCTCAGCCAGGTCAATGAGCCCACAACAACCCACGGAGGAAAAGGGAGTTGCTAAGCCCCATCTTAGCTCACGGCTACATCGTTTAGCCTACTGGAGGTAGAAGAAACCAAGCCAGCCACTACTACCTGGGCCTTcaaggttagctagctaacaaccgGGTCCTTTTTTCCCTCCCTCGCCCCTTTTTCCTGTCTTTTATTTGTGGTTCATTTATTTTGGTGCTACTACTCAGAGAGCATTGTCATCTCAGCGGCTGAGCACAACTACGtcgatggtttggggtcagccgGCGCCCACTGACGGACAGAAAGGCCCTGTGGATTTCACAGCACACAGAGAGGAAACATGAGCACAGCCAAGCCCAGCGGGCTCAAAGCACCCAGCAAGATAGGCAGGCCGACGGGGGCGCCAGCCACCAAGACCTCCCCTTCCACTGCCGGACCCAAAGTAGTCGCAGCCGACAAGTCCACTCCAGGTGGCGGTGCAGTAGGGACGCAAGATGGCGGGGAGAACTTCCAGGTCGGGGAGCGGGTGTGGGTGAATGGGAACAAACCTGGCGTGGTGCAGTTCCTGGGGGATGCTCAGTTTGCACCAGGACAGTGGGCTGGCATTGTGTTGGATGAGCCCATTGGGAAGAACGATGGCTCGGTGGCAGGGGTGCGCTACTTCCAGTGTGAGCCCTTGAAGGGGATATTCACTCGCCCCTCCAAGCTGTCCTACACAGAGGGCGAGGCCAACGGTACTCAGACAGCACCTCCATCCCGGGCTGGGTCAcccaccccctccaccaccaGCCTGGCCTCTCACACCCCCTCTGTCAAGAAGGCCTCAACTGCAATGCCCGCCACTCCAGCCTCCAACCTGGCACGCACAAACAGCGAGTCTATCTCCAACCTCTCAGACACCGGCTCAGtcaagaagggggagagggagctgAAGAATGGAGACCGTGTTTTGGTTGGTGGCACAAAAGCTGGTGTGGTTCGCTTTCTTGGTGAAACGGACTTTGCCAAGGGAGAGTGGTGTGGTGTGGAACTGGATGAGCCCCTGGGAAAAAACGATGGGGCAGTGGCAGGAACCAGATACTTTCAGTGCCAACCCAAGTATGGCCTGTTTGCCCCAGTCCACAAGGTCACGCGCATCGGCTTCCCCTCCACCACGCCGGCCAAGGCCAAGACCACGGTGCGGAAGGTGGTGGCCACGCCCTCAGGCCTGAAGCGCAGCCCCAGCACCTCTTCCATCAGCTCCATGAGCTCTGTGACCTCCTCTGTCAGCGCCAAGCCCAGTCGCACAGGCTTGCTGACAGAAACGTCATCACGGTACTCAAGGAAGATCTCTGGCACCACAGCAGTTCAGGAGGTGCTGAAGGAGAAGCAGCAGCACATCGAGCAGCTGATGGCGGAGCGGGACATGGAGAGGGCAGAGGTGACCAAGGCAACCACCCATGTGGGCGAGGTGGAGCAGGAACTGACCCTGCTGAGAGATGACCAGGAACAGATGGAGGCCAAGATGGACCAATTACGCACCCTGGTGGAGGCTGCTGACAAGGAGAAGGTTGAGCTGCTCAATCAgctggaggaggagaaaagAAAGGTGGAGGACCTTCAGTTTCGCGTGGAGGAAGCTTGCATTACCAAAGGAGATCTGGAGACGCAGACCAAACTGGAGCATGCCCACATTAAGGAGCTTGAACAGAGCCTGCTCTTTGAAAAGACCAAAGCTGAGAAACTCCAGAGAGAGTTAGAAGACACTAGGGTGGCCACAGTTTCAGAGAAGTCCCGCATAATGGAGCTAGAGAGGGACCTGGTGCTGAGGACCAGGGAGGTGGATGACCTGCGGTTGCGTCTGGAGGCCCAGCAAGAGTCAGAGGGCTCAGACTCCACTACCTCCCCTCTCCTGGAGGAAGTGAGCTCTCTGAGGGCTCAGCTGGCTTCTCAGGAAGACCAGCAACGGGTTGAGCTTGCCGGGATGAGGGAGAAGCTGGCAGCGGAGGAGAAGGCACACAGTGAGGCAATGGCCCAGCTCCAAGTCTCATCCACCAAGATTTCCACTGACAACGAGCAGTTGAAGCTACACGTCAGCCAGAATGAGAAGGAGAATGCAGATGTCATAGAGCTGTGGAGCTCTAAGCTGGAATCTGCCATCGCCTCACACCAGCAGGCCATCGAGGAGATGAAGGTTTCCTTCAGCAAAGGGGCTGGCTCCCAGGCGACAGAGCTGGTGGAGACCAAGAGTGCCCTGGAGAGGCTGAAGGTGGAGCACAAGCAGGCACTGGAAGAGGCTGGGGCCAGGTGTGTGGCAGAGGCTGCAGCCCGGGCACAGGAGACGGGGGAGCTCAACAAACAGCTGCTGGTCGTGTCAGAGGAGAAGGAGCGCCTGGAGGAGAGCCTGCGGTCCAGTGTGGAGAGTGCTGAGGAGCAGCACCTGGTGGAGATGGAGGATGTGCTAGTCAAACTGCACACTGCTGAGCTGAAGAAACAAAAACTGTCAGAAAGCACAGACGATCAGACTAAGTCAACACAAACTATGCAAGAGTTGCTTCAGAAGCTTGGCGAAAAAGAAGAGCAGTGCACATCGCTCTCCACCAAATCAGAGGCTCTTAGAAGCCAACTTGCAGGGCTGGAGAGGAAGCTAAAGGCTGGAGAGGAGAAGCTTGATCAGCTCGCAAACGACAAGGCCAAGCTCCAAAGTGACATCTCAGACATGATGAAGTCATCAGGCGACAGTTCAGCACAGCTTACCAAAATGAATGAAGACCTCACTCAGAAAGAAAGGAAGCTGGAAGAGTTACAGACCCAACTtgcagaggagaaggagcagagagCACGTTCTGAGGAGCAACAACAGCAGGAAGTGGCCCAGAAGGCGCAGGAGCATCAGGGTCAGCTAAGCAACCTGCAGGAGAAGATCACACAACTGGAGAAAAGTTTGCTCCAGGGTGAGGCCCAGGCCAAGGAGTTGCAGACCTCCCAGCAGCAAGCCCTGTCTCAGGCCTCAGAGCACCATGCCAAGCAGCTCAAGGAGCTGCAGGGTCAGGCTGACCAGACCAAGCAGGAGCTGAGTGTCTCCAGGGAGAAGGCCCAGGAGTTGGAGAGGCTGGTGGCTGAGCTGCAGCCTTACAAGGAGAAAGTCCAGTTTCTTTCTGCTGAGCTCGACTCCTCCATGCAGCATGTTGAGCGATTGTCCACAGACCTGGAGAAGCAAATCTCAGCACTGGAACACATGTCTAAGGAGAGTTCAGATCTCAGGGCTCATAAGGAAAATCTTGAGAAGCAACTCTTCGAACTCCAGGCCAAGCTCTCTGCCTTGGAAGCTGGTCACAATGAGCTCTCGGTTAAGACTAAAGAACTGCTGACTCTAAGGGACAAGCTTACAAAAGAGCAGGAGGAACTTTTGACCACAAATCAGCAGCTGGATGGAGAGAAGGCCTCACTATTCAGAGAGATTGAGAAGCTCAGAGTTGCTGTTGAGGAGGCACAGGCCAAAAACAAATCCCTCAGTCAATCTGAAATGGAGCATCAGTCCCAAATTGAGGAGCTACAAAAGACAAATGCAGAGAAGCAGGAGGTCCTCTTAAAGTACAAACAGGAGATCCAGCAGCAGGAAACTAAGAGGAATCAGCTAGCAGAAATCTATGAGAAGACCTGTGAGGAAAGGAATGGGCTCCAGGAAGAGCTCAAGCAAAGCAGGGAGAAGCTGATCTCTGAGATGGATAGCCTCGTGTTAGAGAGGGATGCAGCAAGAAATGCTAAGAAATCCCTTGATGCAAAGAATACAGAGTTGCAGACAAGGTGTCAGTCGTTGAGCTTGGAAAAAGTAGATCTCTGTGTGAAAAACACACAGTTGGAGGCCCAGAAGGAGACCCTGGCCAGAGGTAAAGAGGAGATGTCTGCTCAAATTAATGATGCTATATCTGACAAAGAGGCCCTCCAAGCCATGAATACGGAGCTTCAGAATCAGCTGAATATCACCAAGAAGGACCTTGAGAAGTCTGTCCGTGACAACGGCGAGCTCCAGGCTTCCAAAATGAGCCTGGCCAAGATGCTGGACGAGTCCAAGACCAGCAGTGAGGTTACAGACTCCGAGAGGCTTCACCTCATGCAGGAGAAAGAGGACCTGCTTGCTACCCAGCGAAAGGTGCGTTCTGAGAAGGATGAACTTCTTAAGGAGATAGAAGAGTTGAAGGAGAAGCTCAGACTTTCTACACAGGAAGCGGCTACCTCAAAGGAGAAAGTCAAAGAGGTGTTGTCATCTTTTGACAAGGAGAAGAAAGCTCTGTGTCTCCAGAatgaagagacagagaaggcacTACACTCCGTACGGAAAGAGAAGCTGGCCATGGAATCAATACTGGAACAGCAGAAGATGGAGAGTGACCGTTTGGTACATGAAAAGGAAGAGCTTAAAGAAAAGCACACAAAGGAGATCTCTGAAAAAGTTACTCTAACAAAAGAGCGCGACAAGATAGCAGGTGAGATCCGCAGTATGAAAGACCAGCTGGACAGCTCCTCCAAGGCCATTGATGACCTGAAGCAAGCCAATTACAACCTTACGTCCTTGCTAGAGGAATCCAAACAGAAGATCCAAAAGGTGGAGGTTGAGCGAGCTTCCTTGAAAAATAAAAAGTCTGATCTACAGGCACAGCTGCAGAAGCTTTGCTCTGAGAGGGAGGCCCTTGAAAAAAGCACAACTGAACTTGCAGAAGAGCATCATAAACTAAAAGGCAACTCTGAGCAGGTGCATTTGGAACTCATCCAGCAGAGGGACACCCTAAGAAAAGAGCGGGATCTCCTGCACTCCCAGCAGGCAGAGCTTAATAAGAGCCTACAGATCCTGCAGAAGGACAAAGAGGATCTGCTTCTGCAGGTCCAGGAGTTAAAGGGTCAGACAGACTCACTCTCAAAGGAAAAAATGATTATTGAATCGCAGCAGCAGACTGAAGCCACTGAGCGAAGTAAACTGTCCTCTGCAAAGGATGacctctccagagagagagataacttaCAGAGTCAGTTGTCCACTCTGACACAGAAAAACACTTTCCTCCTGCAGGCTGAATCTATCCTGAAGGCAGAGATTGCCTCTGTTAGTGTTGAAAGAGACACAATGGCCTCTGAGAGAAATGGTTTGTGTTGTGATTTAAAGCAACTTAAGATGACTCACACTGGATTGTTAGGTGAGCAACATGGTCTGCTTGAGGAGAATGCCCAGATGCAAGCCAAAGTGCAGGACCTCACTCAGAAATCTGTCACTAGAGACAAGGCCATTGATGAGTTGTCTGCCAGCCTTAAGGacattggagaggagagaaaagccTTGGCTAGGGAGGTTGAGAACTTGAAGGCACAGCTGAAGCAGAGAGACCAGGAAAAGGATGGCTTGGCTGAAGACCAAGAGTGCCTGTTTACCAAGCTGGAGGAGCTTGGCAAAGAGGTCTCCTCCTTGGCTAAGGAGAAGGTAGACCTCCTAGCTATACAGTCCAGGCTGGAGAAAAACCTTTCCTCCCTCCACAGCAGCCAAAAGAGTGGTGATGAGGAATGCTCAAGGCTCCTGGAGGAAGTGGAgaagctgcgagctgcccagacACAGCTTGAGGCAGATGCCCAGACCCTACGTGCTGAGAAGGCAGGGATAGAGGGACAGCACAAAGTCTCTGTGGAGGAGGCATCTGTGTCTGCCAAGGCCCGGGAAGAAATTGGCACCAAGCTGGAAGACCTGAAGGTCGAGAAGGATGCCTTGCTCAAGGAGAGGGACGAAGCCACCCAGCAAGTCACCCAGCTTGAAGCTCAACTCAAAAACATTATTTCCAAGCAGCTTGAGGCAGCAGAGTCCTCAGGGAAGACTGCTGAGGCCGTGGAGCGGCTGACACAAGAGAAGGGCCTTCTGGAGCAGGAGAAGAGTGAGGCCCAGTCTCTGCTGGAGGAGTTCAGGAGTGCCAAGCAGGAGATGACCAGTCAGCTGGATGCATTGAAGCAACAGAATTCTAAATACCAAGAGGAGCTCAACCTCCAGCTCTGCTCAGAGAACCAGAAAATCAGCAGCCTGTGCCAGGAGATtgaggaGCTGAAGCAAGTTGCCTCTGTGAAGTCCCAGTCCCTGGTGGCCTTACAGGAGGAGAACAACAAGCTGACTAAGGAGGTTGGCAGCAGCAAGAAGGAGACCAGTGGCCAGCAGAAGCTGGAAACTCAGCAGTCCAAGCTCAATAAACAGTTGCAAGATATGAAGCAGAGCTTGCCCAATAATACCTTCAGAGAGACCGCCTTGAAGAAACAGTTAGATGAGGAGAAAGCCTCCCTCCAGAAGTCCATCCATAAAAGCAGTGCCTTGATCTCCGAGAAGGATCAGGAGCTGGAGACCCTAAAGAGTGAGTTTTCAGTGCTGCGAGGGGAGAGCGCCACAGCGAAGACACTGAAGTCTACTGTCCAGTCTCTGGAGAAAGACAAGTTGCGGCTGCAGGAGCGTGTTCAGAGCCTGGAGAAGAGCCTTGCAGGAGGACAGGACACTCTTACCAGCACCTCTGGTGATGCAGCTCTGAACCAATTAAAGGAGGACAAGGAGACTTCAGAGAGCCAGGCAGCGATTGAGTTCCTGAACTCGGTTATCGTGGACCTGCAGAAGAAGAATGAAGACCTTAAGGGCAAGCTGGAGAAGATGGCGGAGGCTTCCCTTAATGGGAATAATGCAAGCGAGCTTGATAACTATGACGGCGGTTTTAATGAAGGTCCCTCCAAAAAGAAGGTCCCACCAAGGCTCTTCTGTGACATCTGTGACTGCTTCGACCTCCATGATACAGAAGACTGTCCCACTCAGATGCAGATGCCGGACTCCCCACCCCACACTGCTTACCACGGCAGTAAGGATGAGGAGAGGGCTTATTGTGACATCTGTGAGGCCTTTGGCCACTGGACTGACTCCTGTAACGACGACCAGACCTTCTAATCTAAAGCCTTCGAGAACCATCTTTGGCACAATCTCAACTTTTGCACATAAACCAAATTCTGAGGTGTGCAAGTGCACATGGAGTTCTCTACTGtatgggtgtgtgcatgtgtttgtttgtgcagaAAGTATTTATTGCACAAGCCCCTAAGTGCTATAAATGGGAGGATATTGTCTCAAAACGATCAACTTAATTATCCGCACCCACACGTCATTGACTAGCAAAAGGGGCAGAAATGCTGACGTATTGTGATATAAGGTTTTCATTGGGAATTGTTTCAAAAATCCACTGTTTGTGTTGCGACCTTCTTCAGTGTGTGCAAAAGATGAGGCTatagtttatttttttacacttGGACATActttgtacttaaaaaaaaaaaaaatgttgcctTGTCAATCTGTCTGTGATAATTGTGTGGTGGAAAGGCATGGAGAGGGGCGTGGCTGGCGCCTGTTGCCTGGCAGAGTTGGAGCAGTGAAACAACGGCGTTTGACTTTTAGTTTGAAAAAAAAGACTACCTCGGCCGTGTGGGATGGTGGTCAAGGTTGAAGCCGCTAAACAAACCTAAAGCACTGCACACACTttattcctctcctctgtttaaAATCCTTGGTTCCTTTTTAAATGGCCTTTACAAGAACAATGCATAATTCAATTATAATTTAAGGATAAAATATTGTAAACAGATGGTATGATGCTCATGAATTTCTGTACCTAACTTTTTGAATGTTGAATATCTGTAcaaaaataaattacatttatGGATA

Function

GO: NA

KEGG:

id description
K10421 CLIP1, RSN; CAP-Gly domain-containing linker protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561879 lncRNA downstream 10321 29693030 ~ 29695738 (-) True G494556
TU561869 lncRNA downstream 25373 29680082 ~ 29680686 (-) True G494546
TU561867 lncRNA downstream 27942 29677502 ~ 29678117 (-) True G494544
TU561863 lncRNA downstream 31834 29673676 ~ 29674225 (-) True G494540
TU561860 lncRNA downstream 38522 29667282 ~ 29667537 (-) True G494537
TU561903 lncRNA upstream 43738 29798141 ~ 29798513 (-) True LOC118965073
TU561948 lncRNA upstream 88380 29842783 ~ 29848905 (-) True G494621
TU561951 lncRNA upstream 95926 29850329 ~ 29850535 (-) True G494624
TU561977 lncRNA upstream 146307 29900710 ~ 29925721 (-) True G494645
TU562023 lncRNA upstream 190457 29944860 ~ 29945081 (-) True G494691
XR_005052054.1 mRNA downstream 52283 29650203 ~ 29653776 (-) False LOC110525693
LOC110526522 mRNA downstream 109250 29595416 ~ 29596809 (-) True LOC110526522
XM_021606028.2 mRNA downstream 130461 29526783 ~ 29575598 (-) False LOC110525685
XM_021606031.2 mRNA downstream 130461 29526783 ~ 29575598 (-) True LOC110525685
XM_036979799.1 mRNA downstream 185079 29502192 ~ 29520980 (-) False LOC110525684
XM_021606059.2 mRNA upstream 499 29754902 ~ 29760372 (-) True LOC110525696
XM_021606060.2 mRNA upstream 15521 29769924 ~ 29786901 (-) False LOC110525697
XM_021606061.2 mRNA upstream 15521 29769924 ~ 29786928 (-) True LOC110525697
XR_005052406.1 mRNA upstream 44106 29798509 ~ 29811783 (-) False LOC118965073
XM_021606065.2 mRNA upstream 108795 29863198 ~ 29870407 (-) False kmt5ab
TU561865 other downstream 30486 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 202668 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 222713 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 290745 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 1870757 27827231 ~ 27835302 (-) False LOC110525655
TU562998 other upstream 772283 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 790999 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 820715 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 1906990 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 1916575 31670978 ~ 31671927 (-) True G496777

Expression Profile