RNA id: TU562107


Basic Information

Item Value
RNA id TU562107
length 2534
lncRNA type read_through
GC content 0.36
exon number 2
gene id LOC110525706
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30102891 ~ 30141156 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGAACTTAAATTGGTTTTAATTGTTAATTTACATTTAATTGTAGAGtacaaatttatttataaagccctttttacatcagcagatgtaaaAAGATGTCACAAAGATCTTATACAGAATccctgcctaaaaccccaaacagcaagcaatgcagatgtagaagcacagtggctaggaaaaactcccttgaaaAGCAGGAACctcggaagaaacctagagaggaaccaggctctgagggggggCCAGTACTCTTCTACAAAAACAAGGAATTATAATGTGTCCaagcatgtacagtgcattcacattttgttacgttacacccttattctaaaatgtatgagatctacacacaatacctcacaatgacaaaggaaaaacaggtttttagacatttttgcaaatgtattcagacactttactcagtactttgttgaagcacctttggcagcgattacagccttgagtcttcttgggtatgacgctacaagcattgaacacctgtatttggggagattctcccaatcttctctgcagatctgctcaagctctgtcaggttggatggggagaatagctgcacagctattttcaggtctctccagagatgtttgactgGGTTCAAGtatgggctctggctgggccactcaaggacattcagagacttgtccagaagccactcctgtgttgttttggctgtgtgcttagggttgttgtcctgttggaaggtgaaccttcgccctagtctgaggtcctgagtgctctggagcatgttttcatcaaggatatctttgtactttgctctgttcatctttccctcgagcctgacatttcaaggatgatcaatggaaacaggatgcacctgagctcaatttcgagtctcatagcaaaggatctgaatactcaTGTTTCTTCTTTTTAtacatgtgcaaacatttctaccaACCTgctattgctttgtcattatggggtattgtgtgtagattgctgagaatttgtatttatttaatcaattttagaataaggctgcaacataacaaaatgtgtgaaaagtcaaggggtctgaatactttctgaatgcactgtatgtacagtacaggaTTCACTAGTTTGAGAAAGCTCTCTCTGATTGCCAAATTGGCAGGAGCGGAATATTGAAAAAGTGTAACTTTCTCAAGTCTCTATTACAGATGTACAGAGAACAAAGCAGTTCATTACATCAAAACCAGTTCTAAATCTAACTGAAAAGTATTACAATTCTTGATATATAAATCATAATATAtaatggaatatatatatattttttcttcactTAAGTTCAGAAAATATACATTGGAAATAAAGTACATTTAGCCTTTATCAGTAATACTCTCCTGTTCATCGGTCATAGAATCGACTGAGCTGAAAGCCAGCCTTCATTGGGCCAAAGGATGTAGAGAAGAGAAGTTGGCCTCGCCAACAAACCTTTCATATTCAATCAAATAATCACATTACCATAAACTTTGTTCTGGCTATAGGTTTGATTCATAGAAATGAAACACTCATGAAACAAAACTTCAAAGCATATGGTGCTGGCAGTGTGAATGTGACACCATTGTGAATCTGGCAAAAATAACTAAGCACTTCCAGGTCACGGATTTTGAGTCCTGTCCTGTATACTTTGTATATTAATAACTAGGGAGAAAATTATGGAAAATGTGCACAATTATCAATATATTTTATACATTATCAAACAAATAATTATTTAAAGTATTTCTATGATATATGTCTCTTTTTTCATGCGTAAATGgtcaacaatgtttttttctgttcTATCATTTTTTGGACTGTACAAAATGTTCTGTACATTGTGTCGCAGTAAAAGGGTTGTCCATTCTACTCAACAGCACTTCTAGTTTCCAAATCCACAGAGTTTACACCCCAGTCAGGGCTGCTAATTTTGTGGCCCTTAAAGCCCCATGCAgtctttttaattgtatttttaaatcaTCACTCTGTCTAATAAATCACTCTGTGTGTTTATTTaaagaaaaatattttttatcatTTATTTTCCTGCGCCTATTTTGGCTATTTGAATGCTCAGTCTGATCGTATGGGCGTTGGGAAACTATTTTCCTTTTTTTATATTGTTAAACAAAATTTTAAAAATGTTATTAGGAAAGAAAATGTCCTAATAAAATGTTACGTGTTTCGaccatttgtattatttttataCCATCTTCATTGctgggcttttattttgaagggaaATCGTTGAGGTCACAGCCTTATTCTTGCTGGCATCTCAAACATGAATGTGACATCTCAGTATTAGAAAATGGCTATTACAACCTAGTCTGGCTTTAACATCTCAGTATTAGAAAATGGCTATTACAACCTAGTCTGGCTTTAACATTTCAGTATTAGAAAATTGCTATTACAACCTAGTATGGCTTTAACGTCATCTGGGTTTGTAGATTCAGATATGGTTCTTACTCAGCATAGGGCTGTACAAACAGATCCACCAATGTCATAATGCTAACTACTATATAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562047 lncRNA downstream 110736 29991887 ~ 29992155 (-) True G494712
TU562003 lncRNA downstream 122181 29974486 ~ 29980710 (-) True G494671
TU562004 lncRNA downstream 134591 29962791 ~ 29968300 (-) True G494672
TU562038 lncRNA downstream 141530 29960983 ~ 29961361 (-) True G494703
TU562037 lncRNA downstream 142165 29960144 ~ 29960726 (-) True G494702
TU562142 lncRNA upstream 58364 30164024 ~ 30164528 (-) True G494787
TU562138 lncRNA upstream 68170 30173830 ~ 30178494 (-) False G494785
TU562137 lncRNA upstream 68947 30174607 ~ 30179693 (-) True G494785
TU562182 lncRNA upstream 79644 30185304 ~ 30185520 (-) True G494821
TU562187 lncRNA upstream 86615 30192275 ~ 30196117 (-) True G494826
XM_021606074.2 mRNA downstream 122113 29976158 ~ 29980778 (-) True LOC110525703
XR_005052057.1 mRNA downstream 128009 29970067 ~ 29974882 (-) True LOC118964857
XM_021606065.2 mRNA downstream 232484 29863198 ~ 29870407 (-) False kmt5ab
XM_021606064.2 mRNA downstream 232501 29863228 ~ 29870390 (-) True kmt5ab
XR_005052406.1 mRNA downstream 291108 29798509 ~ 29811783 (-) False LOC118965073
XM_021606082.2 mRNA upstream 83912 30189572 ~ 30191815 (-) True LOC110525709
XM_036979817.1 mRNA upstream 93934 30199594 ~ 30209590 (-) True sftpbb
XM_036981740.1 mRNA upstream 205400 30311060 ~ 30324946 (-) True LOC118965020
XM_021606091.2 mRNA upstream 420374 30526034 ~ 30527686 (-) False LOC110525714
XM_021606093.2 mRNA upstream 431606 30537266 ~ 30553741 (-) True LOC110525715
TU561865 other downstream 427318 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 599500 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 619545 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 687577 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 2267589 27827231 ~ 27835302 (-) False LOC110525655
TU562998 other upstream 421026 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 439742 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 469458 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 1555733 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 1565318 31670978 ~ 31671927 (-) True G496777

Expression Profile